\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0235600.1

GCATGCTCTCCATTCCAGATGGATTGGACCTCCGCAGCTATCTTTGCACTCAGGATGAACCTTCCTAAACTGATAGAGGATGGTATTCTTGATGAAACTGGTAAGGACAACTAAATCACCAAGATATCCTTGCCGTTCTCGCGACCGCGCGGCGGCTCCACCCGCGGCGCGACCGATATGCCCCCCCGCCCGCGCGCGGCACGGGGTTTGAGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.906331
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0235600.1 3 31302940 A G
Osa03LNT0235600.1 3 31303069 T G
Osa03LNT0235600.1 3 31303129 A G
Osa03LNT0235600.1 3 31303645 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0235600.1 osa-miR5082 Cleavage 5.0 19.923 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0235600.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0235600.1 3 qSBR-3 Resistance or Tolerance Sheath blight resistance G249 G164
Osa03LNT0235600.1 3 nan Morphological trait Panicle/flower G249 RG418
Osa03LNT0235600.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0235600.1 3 qPES-3 Morphological trait Panicle/flower G249 G164
Osa03LNT0235600.1 3 QFll3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0235600.1 3 QSn3 Morphological trait Culm/leaf G249 RG418
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus