>Osa03LNT0235700.2

TAATTAAAAACTCCAAAATTGATCTCAGTTGAAGTCACTTGGAATAAAGAACAAAAGGTTGAATGGTTGTCATTATACTACAGCACAACATTAATTTAGCATAAGTGTACATAGATATAGCTAGTAGTATATATCTACACCAACCTACATACACATTATAATGCAGAAGTAGTTAACATAGGTAGAGATTCTTCTGCCAAGAAGATACAGTCAGGGAATGCCTAGTGCTGCCAACTGCATACACAGACTACGGTTAATCGGGCACATAAAAGTTTGCCATGAAAAATACTCCACCGGCTGACCAATGAGGTTTGCAATCACTTGTAAGTCAGCTCTCCATCGTTGCAATAAGCTTAATTAATATATACTCCTAATTTCCAAGCCATTAATTGGTAGGTAATGACTGAGACGGTGGATTTCAGCAGGAGCTAATCAAAGAACCCTAGCTGCGTGATTTGCCTTCCTGCCAGCTGCCTCCATGCCAAGAGATGAGATGACACTTCAAATATCTAGTGTAGGGAGATAAGTCAACTTACCATGCATGTATATTTGAGTATTGTCATCCAAGTCTAACTCCAGGAGGCACAATATCATCAAGTAGCCCCTTGTCAAACGAAACAGCCGGAGGCACCGACGGCGACGGCGGCCGCTGCGCGATGGTCACCGCCGCCTGGGGGCTATTATTATAGCCAGGGCGTTGTAGCCCCTCGCTATTGTTCAGCTCCTGCAAAGACGTCGTCGTCGGCATCGAGCAGCTGACGGCGGTCTCGGAGGACGGCGGGTGCAACCGGGGTAAACCGTACAGCATATGCGGCTGTGGCGGCGGCGAGACGAACGCCGACATTTGCTCGGCGAGGGCGACGGCCGCCGCGCCGTGGATGTGCGCCGCGACGGCGGCGCCGCCGACGCCGCGCTGGAAGGAGGCGGTGTGGTGGCAGTGCTGGCCCTCGTAGGTGGTGATCACGACGGAAGGGTCGTCGGAAGACCGCTCCACGCGCTTCTTCACAGTGCACTTGCTGTTGGTGCACCTGTAGTAGCTCCTTGGGAATGGGCTGTTCTTGACCGCCTTTTGCCCATACTTCCTCCACCTGTAGCCATCCTCGAGGTGGTCAATCTCGCTCTTGGTCATGAACGCGAACCGCGGCTGCCTCGCCCTCTTCTGCCCCTTCTTCGCCGTCGCCGTCGCCGTCGCCGCCGCCGCCGGCGCTGCCTCGGCGGCGGCCGGTCGCTTGTCGGGGGCGGCGGGCTCCCCGCTAGAGCTCGACGACGCGGCGGCGGCGGCGCCGTCGCCCGATCTCGCCGGCGCCTCCTCCTCCTCCTCCTCCTCCTCCCGCGCCGCCGCCCCCACCACATCCACCGGCAGATCCAGCGCCGCCGGTACCATCATCCCCGCGCCGCCTTCCTCGCCCGGCGCCGCCCACCCGCCGAGCTCGGCCAGCACCGCCGACGAGTACTCCGCGAAGGCGGCGTCCCCGTCGAACGGCGACCACTCCGCTCCGGCCATGGCCGCCGCCGATCAACCACCGTGCCGTGCTACGGCTACCGATCGATCTCTTCTCCGGTGATCCGCTTGTAGAGGAGAGTGCAGTGAACTGCGGTGCACTGGGG

Explanation	CPC Score
noncoding (weak)	-0.288616

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0235700.2	3	31323038	A	T
Osa03LNT0235700.2	3	31323659	C	G
Osa03LNT0235700.2	3	31322043	G	T
Osa03LNT0235700.2	3	31322843	T	C
Osa03LNT0235700.2	3	31324308	T	C
Osa03LNT0235700.2	3	31324781	C	T
Osa03LNT0235700.2	3	31325654	A	G
Osa03LNT0235700.2	3	31325847	T	A
Osa03LNT0235700.2	3	31325860	G	C
Osa03LNT0235700.2	3	31326370	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0235700.2	osa-miR1424	Translation	4.0	13.113	1	21
Osa03LNT0235700.2	osa-miR1435	Translation	4.0	15.3	1	20
Osa03LNT0235700.2	osa-miR3980a-5p	Translation	4.5	24.94	1	21
Osa03LNT0235700.2	osa-miR3980b-5p	Translation	4.5	24.94	1	21
Osa03LNT0235700.2	osa-miR5082	Translation	4.5	23.245	1	24
Osa03LNT0235700.2	osa-miR5496	Cleavage	5.0	15.378	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0235700.2	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0235700.2	3	qSBR-3	Resistance or Tolerance	Sheath blight resistance	G249	G164
Osa03LNT0235700.2	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618
Osa03LNT0235700.2	3	qPES-3	Morphological trait	Panicle/flower	G249	G164
Osa03LNT0235700.2	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0235700.2	3	QSn3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0235700.2	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus