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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0235800.1

AAAAGCTGATAAGCCCCAGTAGACAAATAGCCTTTACCACAAGAATTTTTATACTATTGCCAGCTACAGGAACGTGCATCCACAGACCACAGCACATGATAAGCAGAAAGAGAACACCGTCCAACAGTCAATGGAAAAAAAAAACGCTGATGTACACGAGATGGGTTGTCGGGTTAATTGGGTAATTTCAGCTTTTGGATCTTCTGCATCACAACTGGAAGCTTATGAGCAATAAGATTCGGGTCTCCATATGCTGCAGAGTCGGAAGGGTATCCCTTCGCAGACAGACTAGCAAATGTTGCTTCCCTCCAGCAGCATTCACGCAGTACAATGGGTTTTGCTTCGTCACTACCAAAAGAGCAATACACCCGGGTATCCCTCAATCTCATAAGTACACCATCAACCCTAAGCCAAAAACGCAAGAGCAGGAACCAACCAGTTGGCATCACCCTCACTCGCACAGTGAGGAATGAAATGCCATTATCGGCTAACTCATCTTCATACAGGATAACCTCGTCATAGAAAAGAATTGGTTCTTTTGCTGAAAGGGCAACAAGGTCAATCCGATCCTCAGAATCCTCCCAACACAAATTGCGGGGTTCATCCAAACTTGTTTGAATACTATCTGGGTTCTGAACCAAAGCATCACTCCCATTGTACGGTGTCGTGAATGTATAGTCATAATCAAGTATTACTTGATCAGAAGGCTTACTGCATGAAAACACCCACCGCAAACTTGCTCTTAGTTTTCTCATTAATAAATCCAGAGCACATCATTTCTTTCCTTAAATGATTCTAGAAGGAAAGAAATTACAGGCATGTGCTATAAAACTCTTATGACAGACTAAAACGGGCATAAAAATAATACAAGCATCCTGGCAGTTTGTACAGTAAAAAGTAAACAAAGTCATCTCAATTTTTTTATGGCATTCATACATGGGACTATATAATAAAGGTCACACCAGGAAAATCCAACGGTTTTCACTAGAAACACTTCCTAGCATGCATCGAGTATAACTTTATAAGTGATAAAACAGAGTTATAGAAGAACCTCCTGAACTTCCACTTTGCTGCCGCAGGAACTTCAACAGGTGGTAGTGCTTCATGTTTCCATGCCTTCAGAGCATCAAGCGCATTGAAATATAATCTAATGCCAGTTTGAGCATGCTGAAGAGATAAGAAACTCTCCCCAAAAACCATCTCAGGTAAATGTGTTGTCTGAAGTTTATCTTCAAAGAGCTGGAGCGAGGCGGAGTTGAGGATGGGGCCGTTGTGGGACCGGATGACCCACCCCTTCACCCGCACCCCGCCGGGGATCGCCTCCGCGCCGGCCGCCTTCAGCTCCGCCGCCGTCGGGCCCTCCCACGCCTCCGCCGCCTTAGTCATCTCCCGTGGCGTGCTTCGTCACGATGGTGCTTGGTTGTTTGGAGCTTCGACGCCCCCCGGCCTCCCAAGTGGGGTTCTCTTCAGGACTGCGCCTCAGCACAAGCTTCCCCCCCGGCCGTGGCAGCGCAGATCGACGGCGGCGGCGGCGGCGGCGGTGGAGGCGGGGGGATCGCCGGCGAGGAGCGGTCCGAGCGGAGGAGAGCGCAACACCGAGGTCGAGAGGCGAGCCC

Coding Potentia
Explanation CPC Score
noncoding -1.02524
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0235800.1 3 31456573 A G
Osa03LNT0235800.1 3 31456946 G A
Osa03LNT0235800.1 3 31457393 T G
Osa03LNT0235800.1 3 31457695 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0235800.1 osa-miR6256 Translation 5.0 20.49 1 22
Osa03LNT0235800.1 osa-miR164e Translation 5.0 23.263 1 21
Osa03LNT0235800.1 osa-miR1879 Cleavage 5.0 11.16 1 24
Osa03LNT0235800.1 osa-miR2105 Translation 3.5 15.372 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0235800.1 3 nan Morphological trait Panicle/flower G249 RG418
Osa03LNT0235800.1 3 qSBR-3 Resistance or Tolerance Sheath blight resistance G249 G164
Osa03LNT0235800.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0235800.1 3 qPES-3 Morphological trait Panicle/flower G249 G164
Osa03LNT0235800.1 3 QFll3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0235800.1 3 QSn3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0235800.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus