>Osa03LNT0235900.1

TGCAATTCAGCATCTGAATTCCGAAGTGGAGTGGGACTGGCAAGCTTAGATCCCACAGGCCAGAACACATCTCCATTTGCTAATACATTAACACGGATACGTGCTTAAAGTTGCTAAGAACGTCGGTACTAGTGTTACTACAACTGCCAGAGGCACCCTACCATTGTCTCCAGAGAAATAGGTAAACCTACGAGGCTACGAAGTCGAGCTAACTCAGGCCAACAAAACCAATCTACGAACCCCCTTCAAGATCACTAAAAACCATCTAAGCTAACTCAACTCCACTGATGAGGGCAGTCACTTCACAAAATGCGGGTTCAGAAGCTTGGCGACCTCCAGGAATCCCACGCGCTCTTGGCCAGCAAACAGGACCTTCAGCTTCTCATCACACACGATCACCTTCTTGTCCGCAGGATCCTGGAGGTTGTGCTGCTTGATGTAGGCCCAGAGGCGCTTGAGCGCCTCGGTGCGGGGGATCTCCGCGGCTCCCACCACCGCCTGCAGCGCCGGAGACACGAGCCGGGGCTTCGTCAGCCCGGTGGCCGCCCTCTTCTTCTGGGCCGGCTACGGCGGCGGCGGCGGCGCGCCGCGGCAGAGCGAAGGAGGCGGCGGGGCGGGGCGGGCGGAGGGCGGCGAGCGGGGAGGGGGAGAGGGACAGCGACGCGGCGCTGAGCATGGAGGCGGACGCCATTTTTGGTCGGTGAGGAAGGAAAGCTTGGGTTTTTTTGGTTTGGATAATGGCTGC

Explanation	CPC Score
noncoding (weak)	-0.906354

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0235900.1	osa-miR162b	Translation	4.5	17.599	1	21
Osa03LNT0235900.1	osa-miR1864	Cleavage	5.0	16.953	1	24
Osa03LNT0235900.1	osa-miR2103	Cleavage	3.5	21.234	1	22
Osa03LNT0235900.1	osa-miR5501	Translation	4.5	23.704	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0235900.1	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618
Osa03LNT0235900.1	3	qPES-3	Morphological trait	Panicle/flower	G249	G164
Osa03LNT0235900.1	3	qSBR-3	Resistance or Tolerance	Sheath blight resistance	G249	G164
Osa03LNT0235900.1	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618
Osa03LNT0235900.1	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0235900.1	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0235900.1	3	QSn3	Morphological trait	Culm/leaf	G249	RG418

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus