© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0236600.1
CTGGCCGCTTGCATTTCAAGCACCGCGCACCCTTGTGCTCCACTTATTCTCAAAATCTCAGTTACAGATTACACAACACTGAAATGAAAAGGAAAAAGAGAAACAAGTCTAACTCCTATATGCACAGTTTTTTCACCTAGAGGCATCAGGAGATGCGCATCAGAGGATGAATTATACACACTGAGATGAAATCTCAGTAGCATGTATTGCTAATCTGTGGTGAATTCTACACAACTGCATCCTTTTCCAACTCTACCGGGTCAGGGAGAATCTCCCTTGAAGCCCTCTTGAAGGAGAATGAATCCTCCTCCTCGTCCTCATCCTCGTCACTTCCTTGTGACTTCACTGACTGCTTCCTGGCTGACTGCCCCAATGTTGGCCTGAGCTCCGAGCTCCTGCGCGAGTCCCCATGAAAAGCAAAATGCCAAGAGCTTCGAGATGAAGTACTCGTGAGTGATGAATTCGACTGTAATTCCTCCCTCACCACCCGCAGCGGGTTCTCCAATGCTTTCAGGATGTACCGAGCCAGTGGACGCCTGGAGGGCTTTGGGTTCAGGCATGTCTTCGCAACAATGGAGACTGCCCATACCTCTTCTAGGTGGTCTTCATCTACTACAAGTGAAGGGTCTACAATGTTTGAAAGACCCTCCTTGTCATGGGCGTCAATAAAATCCAGTGTTCTTGCCAACCACTCCTCTGAACCAGTGTCATTTGAGCCGCTCACACCAAAATTCCCGGTGATTAGCTCCAGTAGCACCTTTCCAAAGCAGTATACATCATACGAGCAGCTAGCTGGTGGACCTGATGCGTTCTTGTCAAGAGACTTCGATGATCTCAACATCCTGGAGAAGAAACTCCTGCTTCCCTCACTTTGTTGAGTGCATACATCACTCAAACTTCCAAGACACACTTCAAATTTGTCATCAAGAAGCACACTGCTTGCCTGGATATCTCTACAGTTATAATGAAAAGATAAGGGGAAAAAAGATTGGCTTGAAAGTAATTAAAACATCCAAGAACTTGAACAGCATGCATCAAATAAGAACTGCAGAGTAAAATAAAATGAAATAGAAAGATGAAGCAGCTAAGTCATGCAGCTGGAATAAAAGATGACTAGCACCAAATACATCGATATTTAGTGCATTGAGTTACCTACAATGATTGATGACACTAAACCTCAAAAGATAAAGTTTCCATAAAATAACTGCAGCAATTTTTTTTCATGATAGAGACATGAGTTTCTCACATAGTTAGACAGTGTATAATCATATAATGAATTATACATACTGTACAGTACTTATACTTGCATGAAACTTTCCTGATTTCCTACGATACATTGCACATGAGAAGTTGTGAACAAGCCATATGCACATGAATAACAAGAAGCAACATTCTAAAAGTTCAGAAAGGCAAGCAGTTCGTCTGGGGGAAAATCATTAAAAATCAATTAAGTACAGTCAGATAGTATTGGTAGTGCTGATATGGATCCAATGCAACTTGGTGAAATAGTCCGTATAATATTATATTTTAAATGTGGGATTTCATGTCCTCACAAGTAAACAGTTTGTCAGGGAAGCTTCGCACATATTGTTTTCCCCTTTCAGCTATACTTCTTAGAAAAGAAATAGTGGGCCAACTGATGCAATAGGGCCACAAGAGGCTAAGTAGAAGACTATCAAATGTGTAACTAGAAACAGTTTTAAATTAATATATTAAATTGTCCTGTTTCTTTCACTCACGCACTTGCCATAATCAGTGCAGCTTCTTCATTAAATTGGCAATTCATGTGAGCTAAATAACATGTGGAACTTCCGCGCTCTTTTTTATGATGGCGTTAATGTTCAAACTTTTCTTAGCACAGTTATCATATGCTTTTTGCAATTAAAATATTTTCACTAACTATAAACCAATCAGCTGCACATTATATTAGCAAATTAGCTAACAGGCCAATAATATCACTAGGCATACCTGTGAACCAATGGTGGACTACACTCATCGTGCAGGAAGCACAATGCCTCAGCAACACCAATGGCAATCTTCAGCCTTGTTATCCAATCCAACGAGCGCAGCCCCTCCTCAGCATCCACTGACTTCCTGTGCAATGCGGAAGTCAAGTCTCCCTTTGCCATGTACTTGTAGACCAGCAATTCCTCCTCATCTGTGGCCAAATGCCCCAGCAATGGAACAATCCTCCCATGGGAATTCTTTGCAAGGAAGCCCAATTCCCCCAAGTTCTTATTACTGCTCTTCAGATCAACCTTTTTGACAACAACATTGAAGCCACTCTCCAGTTCACCAAGGTAAATGGCCCCAGAGTGCCCATGCTTGACAAGATTGTCATCCCCAAAACCCCCAGTAACATTATGCAACTGCTCATAGGTGAACTCATCTACAATGGTAGGCAGACCTTTCACAGCACCATTTGCTGCCGGTGATGCTGCCATGGATGACAGCATCACAGGATTAACGCTGCTACTCCTGCGCCCCGAACGAATCCCTTCCTCATTCTGCTCCAACCCTCTTCCTCTCGGTCGCCGTCCCCCACTCTTCATCAAGCAGAACACTAATGCTACAAGGAAAAGAACCACCAAAAATGCTGCGGCTGCCAGGACTCCGGCAAGTACATACTTCCACTTCACCCCTTTCTTGCTTGGTGATGGCAATGCATTTGGTGGCTCTGGCAATGAAACACCAATCCTCTTGTAGAATGCTTCACAATCCCCCTGGCTTCGCTGGCTTGATCCGGACAAGCAATTCATGTTTATGTCCACTGCTCCATCGGAGCTGTTCCCAAATCCAGTTCCAATCACCTCAGTGAAGTAATTTCTCGACAAATCAACCTGACGAAATCTCTTCCTGAGGGGCCCAAGCACATCTCCAATGGCACCGTACAACGAATTCCCGGAAGCGTTGAAAACTCCGGTTCCATCACCGGCAGAGATAGACACGTTTGGTAGCTCCCCGGTGAGATTGTTGTCAGAAAGATCGAGAAATTTGAGGCCCTTGATGAGGAACAATGTCGCCGGAATCGAGCCGGAGATGCTATTACCGGCGAGGTCAAGGGTCGTCAGGTTCCCGGACATGCCAAGATCGGCTGGAAGCGTGCTATTGACGGAGGTGGAGCGGAGGTCCAAGACTTCCAGCGACGCCGGGAGGCCGGTGCCAAACCACGCCGGGATCCGACCAGGGAGCGGGAACCCCGAGGCGTTGAAAACCTCGAGCGCCGTGAGCTCCCGCAGCGGGTCGACGGTGAACCCCTGGCTCCGTGCACCCGCGCGGGTGCGGCGGAGCCCGGTGAGACGGAGCTCCGCGACGCGCCCGGCGCGGCACACGACGCCAGTCCAGCTGCAGGGATAGCGCTTCACCGGCCAGTACTCCGCCCGCACCCCGATCGACCCGCGCAGGCCGTGGAGCGCGAGCACGTCCTGCCTCGCGAGCAGCAGCCGCCGCCGCTCCTCCCCCCGCGCGGCGTGGGACGCGACGAGCAGGAGAACCGCGACGGCGACGAGGCAGCGCGGGAGCATGGGGACGGACGAGGAAACAGCACCGCGCGGCAGGGTAGAGGAGAGGAGTGGCGTGGCGGTGGCGGTGGCGGCCACCTCATGGCGCGGGCGCGGCGGCCATGGCGAGAGCGGGAGCGAGCGAAGTGGAGGTGGAGGTGGTGGCGT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0236600.1 | 3 | 32044159 | C | T |
| Osa03LNT0236600.1 | 3 | 32045374 | A | C |
| Osa03LNT0236600.1 | 3 | 32046481 | A | G |
| Osa03LNT0236600.1 | 3 | 32046930 | T | C |
| Osa03LNT0236600.1 | 3 | 32047261 | T | C |
| Osa03LNT0236600.1 | 3 | 32048287 | T | G |
| Osa03LNT0236600.1 | 3 | 32046169 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0236600.1 | osa-miR812t | Translation | 5.0 | 9.799 | 1 | 24 |
| Osa03LNT0236600.1 | osa-miR812u | Translation | 5.0 | 9.799 | 1 | 24 |
| Osa03LNT0236600.1 | osa-miR5807 | Translation | 4.0 | 10.801 | 1 | 24 |
| Osa03LNT0236600.1 | osa-miR396a-3p | Cleavage | 4.5 | 15.826 | 1 | 20 |
| Osa03LNT0236600.1 | osa-miR396b-3p | Cleavage | 4.5 | 15.826 | 1 | 20 |
| Osa03LNT0236600.1 | osa-miR160f-3p | Translation | 5.0 | 21.477 | 1 | 21 |
| Osa03LNT0236600.1 | osa-miR166l-5p | Cleavage | 5.0 | 20.102 | 1 | 21 |
| Osa03LNT0236600.1 | osa-miR444a-5p | Translation | 4.5 | 20.367 | 1 | 21 |
| Osa03LNT0236600.1 | osa-miR444d.3 | Translation | 5.0 | 19.051 | 1 | 21 |
| Osa03LNT0236600.1 | osa-miR444d.3 | Cleavage | 5.0 | 12.99 | 1 | 21 |
| Osa03LNT0236600.1 | osa-miR1435 | Cleavage | 5.0 | 9.027 | 1 | 20 |
| Osa03LNT0236600.1 | osa-miR1850.3 | Cleavage | 3.0 | 17.063 | 1 | 22 |
| Osa03LNT0236600.1 | osa-miR1861e | Cleavage | 4.5 | 17.959 | 1 | 22 |
| Osa03LNT0236600.1 | osa-miR1861g | Cleavage | 4.0 | 17.959 | 1 | 22 |
| Osa03LNT0236600.1 | osa-miR1861k | Cleavage | 4.5 | 17.959 | 1 | 22 |
| Osa03LNT0236600.1 | osa-miR1861m | Cleavage | 4.5 | 17.959 | 1 | 22 |
| Osa03LNT0236600.1 | osa-miR1882a | Cleavage | 4.5 | 8.989 | 1 | 24 |
| Osa03LNT0236600.1 | osa-miR1882b | Cleavage | 4.5 | 8.989 | 1 | 24 |
| Osa03LNT0236600.1 | osa-miR1882c | Cleavage | 4.5 | 8.989 | 1 | 24 |
| Osa03LNT0236600.1 | osa-miR1882d | Cleavage | 4.5 | 8.989 | 1 | 24 |
| Osa03LNT0236600.1 | osa-miR1882e-5p | Cleavage | 4.5 | 8.989 | 1 | 24 |
| Osa03LNT0236600.1 | osa-miR1882f | Cleavage | 4.5 | 8.989 | 1 | 24 |
| Osa03LNT0236600.1 | osa-miR1882g | Cleavage | 4.5 | 8.989 | 1 | 24 |
| Osa03LNT0236600.1 | osa-miR1882h | Cleavage | 4.5 | 8.989 | 1 | 24 |
| Osa03LNT0236600.1 | osa-miR1863b.2 | Cleavage | 4.0 | 21.009 | 1 | 23 |
| Osa03LNT0236600.1 | osa-miR2931 | Cleavage | 3.0 | 9.614 | 1 | 20 |
| Osa03LNT0236600.1 | osa-miR812n-3p | Translation | 5.0 | 9.799 | 1 | 24 |
| Osa03LNT0236600.1 | osa-miR5494 | Cleavage | 5.0 | 23.874 | 1 | 21 |
| Osa03LNT0236600.1 | osa-miR5519 | Cleavage | 4.0 | 14.115 | 1 | 21 |
| Osa03LNT0236600.1 | osa-miR2055 | Cleavage | 4.5 | 19.102 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0236600.1 | 3 | nan | Morphological trait | Panicle/flower | G249 | RG418 |
| Osa03LNT0236600.1 | 3 | qSBR-3 | Resistance or Tolerance | Sheath blight resistance | G249 | G164 |
| Osa03LNT0236600.1 | 3 | qPES-3 | Morphological trait | Panicle/flower | G249 | G164 |
| Osa03LNT0236600.1 | 3 | QFll3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Osa03LNT0236600.1 | 3 | QSn3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Osa03LNT0236600.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | R1618 | G164 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)