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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0236800.2

ACACAAACCTTTCGCTTTCTTTTTTCAGCGGTAACTTGAAAAGAACAGGTGAACATTCACCAGATTAATCCCACACTTGCTTACAAAATTAACAGAAACTACAATGTTATTAGACGGTAAGAGCCACAGGACAAAAGATCATGCTCCTATCCAGATGCAAGCTGAAAATCTATTCAAGGAGACCGGGAGAACTCCTACAGCCCAAGCACATCGAACTCATGGGGCATGTAATCTTCGCTTGGACGGTAGTACTTGTTGGGAGAATACAAAGCAAAGTTTGTGACTTGACTACTGTAAAGGCACGCAAATCTCTCGACCTGATGAGCAAATCGGGAGTTTTGATAACCCGTCTTCATGAGTTGCCCCCACACTTTATGGAACTTATGATGATGTTGCCTTTGAGCCTCTTGATGAAGCCGACGAACATGTTCCTTCTTTTGCAGCAGAATGTCATGCTCCGAGAATAACTTTTCCTTCTCATCTTCTGTAAGATTTTCAAACTTGAGTGACCATTCAAGACGATGGATTTTATCTTCAATTGAATCACGCTCCATCCTAAGATGCCTAAGCTCCTTTCGAGTAGATTTTGATTCCGAAAGAAGTTTCACCTCTTGCTCTAGCTCTGGTATTACTAGCATTGTGCGCCAACCAAGGACTTTCTTGCTGCGCAGTATGTCTCCATAAATGTGATCTCCAACATATAAGATCTGAGAACTAGAAGCAACAGAAAGTAATCTGTGAAGATGACCAACATTTCCTCCCTGGTAAATTTTGTGGATTGGCCTTGAAGGCTGCTGACCTGATCTGGGGCTTCCAATATGAAGATCAGCATTTAAAAGCTTTCCAGAATCAGGCTCAACTTCAAACAGTCCAGCACGGTTACCATCATGGAAGAACCCTGGCTTTGCACTTCCTGTTATCACAACATCGAAATATCCAAGCCACTTGTGGTTGTGACTGGAGCTTACATCTGAGGTATATGGCCTACAGAGGTAGTTCATGACAACATCTGTGTAGTCCCACAGACTATTTGTCACCAAGAATGTTGAGCGCCCAGATTTTCTAATCATTTCAAGCATCGGTACAATGGCCAAGTCCTCGTTGATGTACCTGCTAGGATCCTTTGCGACCATTCTCTTTAATGTTCCATCACGATGGCACAAGTCAACAGCAGACCTCACATCTCTGTACATAAGCGGATAGTCAGTGCCTGAAGGTACTTTTCCAGGATTGTTATCCATGAAATCAACAAGTTGAGCAAACAGATAGGCTTCACCCAATGAGAAAAGTGTATCTATGAGGGCATAGTCAGGCTCATCAAAGGAATCTCGTATCAATGTACTTCCATAAGCAGACACTTTTTCTTCTTTTGACATTTCCCTAAATCCATGATAAGCAACTTTCACATACTTGTGCCGATCCATCTTCAAGATATTCCCTCTCTTCTTATCAAGAACTAATCCTCTGACCATATATTTCCAGTCAAACTGCCATGTTAACAGCTCCTCAGGGTAGCCAAGGTCCTTGACAAGCTTCTCTATTGTGCCATGGTAAGCAAGAGCCTCAAATGTCTCGGGCTTGTACTGCGCAAGAGTGTAGTCCATATCAAATCCTACTGCAGTGATGTTCCTCATGTTGAGTGACCGGTTGCAGAATATCTCTTTCCCAACAGAAATGGTTCTAGGTTCCACTGATGGCGTTGACCATATTGCTCCTGTTGATGCTGGCTCCACCGCACCGGTCTCCATCCTTACAGCACTGCACCCTGATATGAGATCAATATTTCAGGACAGAGCACGCTAAACATTGAGTAATTGATGTTCGCCATGTAATCAGTGAAAAAGTGCAGTGCCACAATCTGGAATTCCAGCATCTAGGTAAAAATTGACGGATGATCAGCCGATTACATAGAGTAAAATGAACATTTGAACTGCTATCCATTCCCTAAACAATTGTACTACGATTGCAATGTAATAACAAGTGTGAAACACACATAAGAATACATCAAAATTCAAACAAAATCCATAATACCCAATTGCCATTACCGATTCAGCAAACGGCCGCAAAATTCGAACCATGTAAAATACACCAAGAGAGCAAAGTCGCACTGTAAACTAAGATGGAGCGTGAAATTCACTATAACAACCAGCAAAAAATGATTAAAAAAACCGGCAAATATAACCGCACCATGTCGGCCATGGGACGGCTAAAACAAAACGGTTAGCCTCCTCCGCGGCTCGCGTCGGATCAAATCTCTAGGGCCCGAGGCCGAAGAAGGCGACGCGGCGGATGAGCACGACGAGGAGGCGGAGGCGAAGAAGAGGAGGAGGGGAGGGGAGAAGGGCGCGAGGTGGCTGGCGGCGGTGGCGAGCGGCCTCCTGGCGAAGAGCATATCGCCCCCCCTTAAATAGGCGAAGGCGAAGGCGAGGCGACGCCGAGACGGGACGGGACGCGAGACACGAGTGCGACGAGGCGTCAGCGTGGGGCGCGTGGGAATAAATTGAGCAGTGGGTGTGAGTGGGGAGAGGAAGGAATGGAATCCAAACGGGCGGGGCGCGCGCGCGACGGCGCTGCTCGCCCTCACCCTTCACCGGCGCCGCGCGCCGCCGGGCATTGGCGGTGGTGGCCGGCGCCGCGGCGGGGGGCGGAGGGATCGCGTGAGGATTCCGATGCGATGCGAGGCTCGCGTGCGTTGGAAGCCAGCGAGCGACGGGAAGGGGAGGAGGTGGGGATG

Coding Potentia
Explanation CPC Score
noncoding -1.00864
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0236800.2 3 32098014 G A
Osa03LNT0236800.2 3 32099391 T A
Osa03LNT0236800.2 3 32099487 G C
Osa03LNT0236800.2 3 32101117 A G
Osa03LNT0236800.2 3 32102033 T C
Osa03LNT0236800.2 3 32102151 C T
Osa03LNT0236800.2 3 32102495 T A
Osa03LNT0236800.2 3 32103212 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0236800.2 osa-miR5833 Translation 3.5 21.358 1 21
Osa03LNT0236800.2 osa-miR159a.2 Cleavage 3.5 23.669 1 21
Osa03LNT0236800.2 osa-miR2118b Translation 5.0 17.479 1 22
Osa03LNT0236800.2 osa-miR2118g Translation 5.0 17.479 1 22
Osa03LNT0236800.2 osa-miR2118i Translation 5.0 17.479 1 22
Osa03LNT0236800.2 osa-miR2118n Translation 5.0 17.479 1 22
Osa03LNT0236800.2 osa-miR5339 Cleavage 5.0 19.119 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0236800.2 3 nan Morphological trait Panicle/flower G249 RG418
Osa03LNT0236800.2 3 qSBR-3 Resistance or Tolerance Sheath blight resistance G249 G164
Osa03LNT0236800.2 3 qPES-3 Morphological trait Panicle/flower G249 G164
Osa03LNT0236800.2 3 QFll3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0236800.2 3 QSn3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0236800.2 3 nan Resistance or Tolerance Drought tolerance R1618 G164
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus