Transcript

Sequence

>Osa03LNT0237000.1

CCCGAACGTCCCCATCACGCGCGTCGACACGTGCGTGTTGTTGTCTGACGTCAGCTTCGCCAGCCCGAAATCCGCCACCTTTGCTTCGAAGTTGTTGTCGAGGAGGATGTTGGCGGATTTGATGTCGCGGTGGATGATCCGAGGATGGCAGTCTTCGTGTAGGTAGGCGAGCCCCTTCGCCGACCCGAGCGCAATGCGCAGCCTCGTCGGCCATGGCATCACCGGCAAGCCTTTCCCATGGAGGTGGAACTCGAGGGTCTTGTTTGGGACGAACTCGTAGACGAGCACGCGGCGCGCGCCGGCGATGCAGTAGCCGACGAGGGAGACGAGGTG

Coding Potentia

Explanation	CPC Score
noncoding	-1.13571

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0237000.1	3	32184185	A	G

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0237000.1	osa-miR5837.2	Cleavage	4.0	22.553	1	20

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0237000.1	3	nan	Resistance or Tolerance	Drought tolerance	R1618	G164
Osa03LNT0237000.1	3	qSBR-3	Resistance or Tolerance	Sheath blight resistance	G249	G164
Osa03LNT0237000.1	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0237000.1	3	qPES-3	Morphological trait	Panicle/flower	G249	G164
Osa03LNT0237000.1	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0237000.1	3	QSn3	Morphological trait	Culm/leaf	G249	RG418

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus