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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0237200.1

GACCAATAATACTGTTTCATATATATAGCTTACTAAAGTTGGAAATACAAATAATTAACTACGGTTACACTGGATAAAAAAAACATGTTTCTTTCCATGCAAAAAAGATGATAAAATTCCCAATTGTGAAACTAGACGGTGGGCAAAATCCACATCCCTATATCTGAATTTGGAGCTTCGATGAGATCATACTCTTCGGTTTCTCCATCCTCTACCTTGGATACCTCAAAATATTTATAACGCACAAAAATAGCGTAGACACAATCCTTCTCCAGCCCACACTCATTGGCCGAACGTGAAGCACCGAAATAACATGGAGCTATCAAGAACGTACGACCACCGATGTCCTCGGCTGTGCACCATTGATGCTTGGAGAAATCCATCTTATGAACAGTGACATCGCAGATGTACTCGAGGTTGTAGTCAAACAGCTGGCTTACCATGTATAGTTCGCCCTCTGACTCCACCAAGAATACGCTAGCTGCGCCCCAGAAATCCAAGGGTTCCGTGATTGCGATGAAGCTGAACGTCGGCTCTGGGGTGAACTCCAGCACGCGGATGCTGTTGAATCTGCCATTGAAGTAGAACTTGCCTTGGCAAGCAGCGATCGAGGTTATCGGCGCCTTCTCGTGGCCCTTGCCATCCACGAGTGGAAGCAAGGGCTGTGTTCCAATATCATACTCATGTCTAGCCCACTCCTCATCTTCTCCTCCGACGTGACAGTACCAGATGATGGTGTCTTCGGGCTCGACGAGAAGCACGATGCAGCCTGGGATCGTCGGTTTGCCGGAGAGCACGCATGCGCATCTGTTGTGCACGACTTCCGGCAGGTGCGGCAGCTGAATCTTTCCGTCGGAATCCTGTGGGTTCTGCAGAAACGTGGTGGTGTCGTCGCGGATCAGGATCCATCCCCGCGGCGTCGGCCAGGCGTTGCTGTTGGTCACGCCGGCTTGTCTGAGTCGGCGCCATGCTTCAGGGCGATGCAAGGCAGAGGGACACGGCCTCCCATAGTCGGCGTGGTGTTGTCAAACCTCTATTCCTCTCTTCTTCGTGGGCGTGGTGTTGTCAAGCCTCTATTCCTCTCTTCTTCGTGGGATCTGCCACCGTAGTGGCTCCCTTATATAGGCGAGGAGGGGGAAATTGGGAAGGGTTGGGACGAGTCCAAATCAGATGCCAATCGGAGTGCCACAGCGTATTTCGAGTCGGTCATGGCAACGGACAAACCCCTGGATGAAATTCCACGAACTTAACTGCGATGAGGGGATCAGTACCTTGTTAGAGGGGGGCTGTGCGTCGCGATCGGCGTAGGGGGCCGCGGACTGGACGGCGGAGATGGCGATCGGCGTACGGGGCGGCGGATCGGCGGGGACGGGAAGGTCCCGCGGGGGGAGAGAGGGAGGAGAAGGCCGCGGCGTCCCCGTAGTCCGCCGCGATCCCCGTCCGCCCGCGCGGCGGTGGCCGCTTGGACGGAGGCAGTGGAGGCGCGGAGGGGCCGTCGACGGCTGTCGTGGGTGACGGGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.733399
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0237200.1 osa-miR1438 Cleavage 4.5 8.972 1 22
Osa03LNT0237200.1 osa-miR5071 Translation 4.5 21.198 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0237200.1 3 nan Resistance or Tolerance Drought tolerance R1618 G164
Osa03LNT0237200.1 3 qSBR-3 Resistance or Tolerance Sheath blight resistance G249 G164
Osa03LNT0237200.1 3 nan Morphological trait Panicle/flower G249 RG418
Osa03LNT0237200.1 3 qPES-3 Morphological trait Panicle/flower G249 G164
Osa03LNT0237200.1 3 QSn3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0237200.1 3 QFll3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0237200.1 3 be1 Others Others nan nan
Osa03LNT0237200.1 3 nan Physiological trait Flowering R2404 R2856
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus