© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0238700.1
GAGCCGCCGGCGCCGGCGAACTCCTTCCTGGCCGCCCTGATCGCCTCCCTCATCGCGCAGTGCACCGACGACGCCAGCAGCAGCGGCGGCTCACCGGACGCTTTGGAGGAGAGGACGCGCTTGTGATCGCGGGCGCTGTTGATGAGCTCGACGTTGAACTGCTTGGGGATGGTGTCCACGGTGGGGATCTTGTACGTCCACGTGCCGTCGTTGATGACCAGCCCATCGGAGTTGGTCGTGTACTCCTCGTTCGTGAAGAAGCCGATCCCTTGCACGAATGCGCCTTCCACCTGGCCCAAGTCCACAGCAGGATTCAGGCTCTGCCCACAGTCGTACACGAGGTCGCTCCTCAGGATGGTGGTTTCTCCCGTCAGCACATCGACTTCCACCTCACTAATTGCAGCTCCATAGTTCAAGTAGCTAGTGAACGTGGGGTCAGGCGTCCAGTACGCGTGCTCTGTCAGCTTCACGCTCGCCATGCTTGCCTGGGCAATCAAGGATTTCCATGGTAGCGTGCCAGCCTTCTCCTTGATGGGCTTCAACCTCTCCACGAGGGCGGCGCACGACTTCCGAACAGCCTCGCAGCTAGTCTCGGAGGTCGTGCTCCCGCCGGTGAAGCCTCCCTGGATCATGCTCAGGGTGTCGGCCTGGATGACACGGACCTTGTCGAGGAGGCCCTCGCCGCCATCATCGCAGAGCTGGCCCAGCGCGAACGCTGTCATCTGCTTCACTTTCGTCCACAGCCCCTGCCCGATCTCGACGCCGCCGACCTCGACGGCGATGGAGCCGTCGTTCATGATGGACACCTTCCCCGGAGATGGCCGGAGCCTCACGTCGTAGGTGATCGGCACGCAAGAAATGCCCCGCTTCTTCCACCTGCTGCCGGCGTTGAAATGCTCGACCACGGCGGCCCTCTGCTGGTACTCCGGCGACGACGCCAGCTTGTCGAAGATGGTGACGAGGCTGTACGTCGAAGGATCACCGGCGCTATTCCCGTAAAACACCTTGAGGCTCTCGAAGTCATGGAGGTTCTTCCTCCTGATGGCGTTCGTGTCCACTGAGAGAGTAGACGCGATGTGTTCGACGATGGCCTCGGCGATGAACGAGCCCTGCGCGTCGCCGGGAGCCCGCATCGCCGACTTCGACGAGACGTTCGTCTTGCAGAGCTTGATGTCGAAGGAGAGAGCCCCCCAGTTGTACTTCTTCAGAGCCCCGACAATGGCGACTGGCAACGCCGGGCTGCAGTCCGGCGATATTCCGCAGTTGATTCTGAGATCAACGTGCAGACCCGTGATCTTGCCGTCGGACTTGAAACCGACGGAGTACTTTACCTTCATCGGATGCCGCCCTCCCGCCATGATCATGTCTGTCTTGCGATCGAGGTACATTCGAACCGGACGCCGCAGCTTGAATGCGGCGACAGCACAAGCAGTTGCAACATGTATTGCTTTCATTGCCTTTCCACCAAAACCTCCTCCAACTCTTCTCGTGATGATACGGACATTGTGATATGGAATGCCAAGGCACCTCGCAACAGTATTTTGAGTAATCTCAGGTAGTTGCGCCGACACATAGAGGGTTATACAGTTATCTTCATCAGGGATAGCTAAGGCCGTCTGTGTCTCCATGTAGAAATAGTACTGGGATTCAAGTTTCACCTCCCCATCTATGATCTTGTGATCAGCTTCAGACATAGCTTGGTTGAAGTCACCAATTGGCGTAGGAGCTAAAAATGGGGGAACTGGGAAGTAGCTGTTATGCTGGACAGCATCTTCTATTGTCAGAATTGGTGGCTGAAGATTTTCGGTACTATATTCGATCACAGCTTGCTTCGCCGCCATATAGGCATACTTTTGTGTTTCAGCAATCACAACACCAATATTCTGGCCGGCAAATTCAGAAACAGGATGAACGAAAAGCGCTTCATCTCCAAGCATTGGGAAGCATGATCCAATATTTTCTCCACCGGTAGGAATGTCCTTTGCAGTGATAACTGTGATGACCTTCTGTGAAGCCAAAGATGATCTGAAGTTTATATCTTTTATGTGAGCGTGAGGGTGTGTGCTATAGATAAATGCTCCATAGAGGCAATCCTTCGGAGCAGGGATGTCATCAACATACACTGCCTCTCCAGAAGCTTGGAGCTCTGCTCCGGTTTTCTCGATCGGCTTTCCAACAGGTTTGTATTCATCAGAGAAAACCATCTCTTGCCTTGATTTTATTGGCAAATCAGAGCTGTCAACATTTGAGTGCTTCTCCGGAGAGGAATTAGCGCTACCGTTTGCGGTTCCATTAGTACATGAACCATTGGGAACATTAGCATTTTCAGGCTCATCCAAGCCATTAGCAAGGGAAGTCAGGAATCTGAACAGATAACTGACGGCCAAGCTGACTCTGTATTCAGGATGTGTTGTGCCTTCAGCTGGTGAAACAACACCTTTAAGAAGCCGAACTGCTTCAAGTATCACTGGTGCACTAACCAATTTTCCCTTCAAGAACTCCTCAACCTCCCTAGCTCTGATGGCGTGTTCGGCCCCGAAGGCGCCAAATGCCAAGCAAACATCCTCAATGAGATGGCTCCCTGATGATCCATCCACTGAACTTCTTGCCAAGAATGCAGAATTAACATATGACACAGCATTGCCAAGTGGACGAGGAGCCGCACGAAACGACTCAAAGGTGATGCCATCATCTGAACCCCAATCCGGGATAGAGATGCTGACCAACAACGTCCTGGAATCACATGGAGGCTGCTTCAAGAACTCCTCCAGAGTGATGCACATCCTCTTGGCGGCCACCTGGATGGTGACAGTTGATCCTGCAGCGAGAAGAACCGTTGCGATGTCCGACGGGAAAGACAGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0238700.1 | 3 | 32870656 | T | C |
| Osa03LNT0238700.1 | 3 | 32871164 | T | C |
| Osa03LNT0238700.1 | 3 | 32871631 | C | T |
| Osa03LNT0238700.1 | 3 | 32873388 | C | T |
| Osa03LNT0238700.1 | 3 | 32875405 | C | G |
| Osa03LNT0238700.1 | 3 | 32875502 | A | C |
| Osa03LNT0238700.1 | 3 | 32876578 | T | A |
| Osa03LNT0238700.1 | 3 | 32876698 | A | G |
| Osa03LNT0238700.1 | 3 | 32877438 | G | A |
| Osa03LNT0238700.1 | 3 | 32877647 | T | C |
| Osa03LNT0238700.1 | 3 | 32878494 | A | G |
| Osa03LNT0238700.1 | 3 | 32878797 | A | G |
| Osa03LNT0238700.1 | 3 | 32878908 | G | A |
| Osa03LNT0238700.1 | 3 | 32879048 | C | T |
| Osa03LNT0238700.1 | 3 | 32879962 | T | C |
| Osa03LNT0238700.1 | 3 | 32880494 | G | A |
| Osa03LNT0238700.1 | 3 | 32880717 | A | G |
| Osa03LNT0238700.1 | 3 | 32881730 | T | C |
| Osa03LNT0238700.1 | 3 | 32882009 | T | C |
| Osa03LNT0238700.1 | 3 | 32870515 | C | T |
| Osa03LNT0238700.1 | 3 | 32875533 | C | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0238700.1 | osa-miR5528 | Cleavage | 5.0 | 21.837 | 1 | 21 |
| Osa03LNT0238700.1 | osa-miR167a-3p | Cleavage | 4.5 | 24.87 | 1 | 22 |
| Osa03LNT0238700.1 | osa-miR1853-3p | Cleavage | 4.0 | 23.838 | 1 | 22 |
| Osa03LNT0238700.1 | osa-miR1853-3p | Translation | 5.0 | 15.994 | 1 | 22 |
| Osa03LNT0238700.1 | osa-miR1873 | Translation | 4.5 | 22.408 | 1 | 24 |
| Osa03LNT0238700.1 | osa-miR1846e | Translation | 4.5 | 23.398 | 1 | 20 |
| Osa03LNT0238700.1 | osa-miR1846e | Cleavage | 5.0 | 21.533 | 1 | 20 |
| Osa03LNT0238700.1 | osa-miR5145 | Cleavage | 4.0 | 21.168 | 1 | 24 |
| Osa03LNT0238700.1 | osa-miR5340 | Cleavage | 5.0 | 21.864 | 1 | 23 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0238700.1 | 3 | nan | Morphological trait | Panicle/flower | G249 | RG418 |
| Osa03LNT0238700.1 | 3 | qSBR-3 | Resistance or Tolerance | Sheath blight resistance | G249 | G164 |
| Osa03LNT0238700.1 | 3 | qPES-3 | Morphological trait | Panicle/flower | G249 | G164 |
| Osa03LNT0238700.1 | 3 | QFll3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Osa03LNT0238700.1 | 3 | QSn3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Osa03LNT0238700.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | R1618 | G164 |
| Osa03LNT0238700.1 | 3 | Qbp1 | Resistance or Tolerance | Insect resistance | R1925 | R2443 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)