>Osa03LNT0238800.1

GACACTGGATAACAACATTATGGCACCAAAAGTATTATATCTACAATACACACAGTAATCTATCTAAACAAACTGTAGCAGGTGATAATGGAAGCCTGGCGAACCTTGGGCATAATAATATAATCAGTAGAATTGCATACTGAATAAAATATAAATATTTACATTATTCATACTGCAAATAAGGAGAAGTGCACCTGTGCCAATCAAAGTTCCCACGCAAACACCAAGAAATATAGCCTTGAAGGCGTGCCCAAGCGCATTGAGCAGTGCTCCAGTGCTAGAGAGACATCAATCCGTGGTGTTTGTCGAAGGCGTTCATTGGCAAAGCAAATCCCAGGAGAATGATAGATACATCCAACCCCTGAAGTATAATCTTGAAGTAAACTTGACAGATCAAGTAACACCATGAGGAAATAAACGAGCATCGCTCCTCTAGAACCGCCATCAGATTTTGGTGATCTTGTCAGCTTTCACAAGAGGATTCTGTTTGGCAATCTGCTCCCTCCCGACCTGCTTGTAATCAAATGTGCATTTGTGTGAATCGGCATAGCGGTGCATTGAACAGAAGGTGCCTCCGCAGCGGCACTTGAATCCTGTCAACCCAACCTTCTTCCGGCATGATAAGCAACGGTTACTGGGTGGCTTTGGTGTATCCTCCTCCATTACTTGTTTCCCATCTGCAACTGAACCAGACCCTCCATCTGTGACTTCTGTCACCAAAGGTGTGGAAGACAATGAAGCAAGAGGTTTCTTCTCCACAACAGTGGCCACTGTCTTGGCCTTAACGGTGTCCCTATAACACTTTGAGCACATGTTTTCTGTCATCCGGCTGCCAAAGAAGCCACAGTTGTTAACGCACAATATAGGGGCCTCAGGTGTGTGGACTCCAGTCTCCTCTGCCTCCTTTTTCCAGCTCTCTTGTGCCATTGTAAGGAACACCAACGCGAGGAGGACGAGGGGTTCGCCGGAGAGGCCCGATCGATCGGATCTGCGGGGGGCAGCCTACGCGGATTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTTCCCCAACCTGTTCTTCCAGGAGAGAACGGAGTTTTTTTTTTTTCCTTTCTGCTTTTCGCGTCGCCTTCTCTTTTTTTTTTTCCTTCCTTTTTTTTTTCTTCTTCGGGC

Explanation	CPC Score
noncoding (weak)	-0.878238

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0238800.1	3	32974584	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0238800.1	osa-miR5805	Cleavage	4.0	16.256	1	24
Osa03LNT0238800.1	osa-miR528-5p	Translation	3.5	23.559	1	21
Osa03LNT0238800.1	osa-miR1425-5p	Translation	4.5	18.332	1	21
Osa03LNT0238800.1	osa-miR1441	Translation	4.0	14.413	1	21
Osa03LNT0238800.1	osa-miR2098-3p	Cleavage	5.0	15.107	1	20
Osa03LNT0238800.1	osa-miR5515	Translation	4.0	16.899	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0238800.1	3	nan	Resistance or Tolerance	Drought tolerance	R1618	G164
Osa03LNT0238800.1	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0238800.1	3	Qbp1	Resistance or Tolerance	Insect resistance	R1925	R2443
Osa03LNT0238800.1	3	qSBR-3	Resistance or Tolerance	Sheath blight resistance	G249	G164
Osa03LNT0238800.1	3	QSn3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0238800.1	3	qPES-3	Morphological trait	Panicle/flower	G249	G164
Osa03LNT0238800.1	3	QFll3	Morphological trait	Culm/leaf	G249	RG418

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus