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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0239300.1

CCCACATTGACTAACATAACAACTTGCACAGATTCTGAATTTGATGGAATTTCTACAAAATTTCAGCATCATTTTGACAAATTGAACAAAACTTTGACAAAATTTCAACGACATCTCAGCAACCTTGCCCTCTCGGCCTTCACATCCAAGCCACCTGTAGGTCGCCGCCTGGCCGACGCCCAACGCCTCCTGGCCGGCGCCCGCTGCCGCCTAGCCCCCTCCTCGCCGCCGCCTGTCACTCTCCCTGCCGCCACATACCGCGCGCCTCCTGCTCGCCGGCGGGAGGGGCTACGGCATTGCGCCTGGCCGCCGCTCGCTCGGCGTCGACGCCCGCTCGCCACCACCTACCCCTCTCCTGCCACCGAGCCCTCTCCCCATCGCCTAGAACTATCCCCGTCGCCGCCTATCGCGCAGCCTCCTACTCGCCGGTGGGAGGGGTTGCGGCGTTGCGCCTGGCCGATGACCCGCTCGCCGCCGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.851567
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0239300.1 3 33355149 A G
Osa03LNT0239300.1 3 33355258 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0239300.1 3 QFll3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0239300.1 3 QSn3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0239300.1 3 nan Resistance or Tolerance Drought tolerance R1618 G164
Osa03LNT0239300.1 3 qSBR-3 Resistance or Tolerance Sheath blight resistance G249 G164
Osa03LNT0239300.1 3 Qbp1 Resistance or Tolerance Insect resistance R1925 R2443
Osa03LNT0239300.1 3 nan Morphological trait Panicle/flower G249 RG418
Osa03LNT0239300.1 3 qPES-3 Morphological trait Panicle/flower G249 G164
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus