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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0240000.1

GTACAATTGCAATGGGACTTTTCATTATGATCAGGCACGTTCATGTATCAAGAACCTCGAACTGAAAACCGAGGCCACAAAGTTGGATGAATAGTTACAACAGCTAAAATTACAAGTTAGACGAGGTGATGTCCTATGACATGGCCGAGAACCATCGCGACAAGTAGTATATCCAGAAAGCATAGAATGAGCTTACTATGGAAAACCCTATGTTGGTAAATATGGAGCCAAACAAAACTGATATAGCGTATGTCAGATTGTACCTATTGAAGTAAAGGTGCAGTGGCAAAATCCCCACAACCTCCCTTCCTATTGAGTAAAGGCTTAGCCAAAGTTGCAGATCTCAATGGTTTACCTCACTTTGCAAATCCGAGTTACCTTCAAAGTAACGGCGTTTTGTTTGATATTGCTGTGGTATTATGAGGGCAAGATACACTGATTTGTTCAGGCAAAGTTTGTATGGATTCTTCAAAATGAGAACATTTGATTTGTCATTTGCTTTCTTTGAATCCTTCAGAACAACACGAGCAATGGTAAAGGCATTGCCTTTTTCTAATGCAAACTGCCATTCCCTCAATGTAATGTAGAACCAATTTTTGTATGAATTTGTTGTTGCCTTCACCTCCACATATTCTGTGAAACCCGATTTGTGTGTGACAACAATGTCATAAGGCAACCCCGTTTCATTTTCTTGATTCACCCACCTGACATTATTGGATCCAAAATGATCAACAAAATGTTGGTGGGCTGCAGCTTCCCCTTGCTTGCCAATTCTCAATAATTTGTCTCTGTCTGGAGCCTTTATGCAGAGCCTATCCCTCTTCTCCGAAACATTTGCCAGTTTATCATTGAATTCTGTTAGCTCAATATCCACCACTGAGTTTGCTGAGCTTCCGGTTTCTAAATCCAAATAAGCCGGCAAATTGGCAGAGTTAATCGACATCACCATATGAGGCTCATCGCCAGTTGCCCCTATACGTTCTGCAAGTACTGTATTTTCTGATCCAAAATCATCTTCTGTAATCCAATCCCCTTCAAGATCAACAGGACCCACAATATCTTCTGAGTTTTCACACTGAGTCTTGGTTAAGTCTAACGAAGGTACAACATTGTTCAAGTTTGTCTCTTGATTGGGTGTAAACTGGCTATTGTGAGATGTTATGAAATCTGGGGCTGTTTTCCAGTCGTTTGGTGGCCAACTTGAAGCAACTCCAGACGTTCTCTGATGCTTGGAAATATTGAGTTCACATGTAGATCGGATTTCAGTTTTCTGACTGTCACATATAGATTGGAATTCAGTTCTTTGGCAATCAACATCTTGGTCTGCTATGATCAAGGAAGAAAAGGACCAAACAGCTTCATGCTCAGGCAAATCAGGCACATTCTGATTATTAACGATAAAAGACTCTATTTGTTCAGCTGTGGTGCCAGAATCTGCCATGGTTTTGACCATGTGCAGAAAGTTCGCAAAGTGCAGATCAGGGGATCCATCAAAGAAAAGTCTAGACAGTTCCAGAAACAGTGAATGTGAATCAGCTTCTTGCGTAGCATATAGATTATTTCCCTGCAATAGGCAATTGCATTTGAATCTTCTCTTACAAGAACTCTCACGTTCTTTCAGCTTATACTTGTGGAATAACTTCTCAACAACAATAACTTGGAGATTGCTAAGCTTCGTGATTTCATTTTGTTGAAAGTTTACATATGTATCTCTATGCATCTTATAGATGTAGCGTTGCATATATGGTAATAGCCAAGAAATTACTGTAACCTTTTCTCTGTTATCCACTGTACCGTAAAATATTGCTTCACGATAAATAACCTTAGAAAGTGCAGGGATGCCTAGGCTTTTTAGCAATGCAGCAATTCTTCCATACAGCAGTTGCTTGTCTTCATAAGAAAGTTCTCCAAATTGTATGAAGTTAACACCATTGTAGTCCTCAAAGTGTTGCATCAACTCATTATCATCTACCCAGCAAACAAGGCCAAAAGAAGGATGGAGAGAGACCCATTTATCACCCAAGGTTGGCAGTATTGTTGTCTCCAACTTTTGAAGAGATCCTTCCAAGAACAATATATCATTCATATTGTCATTTGCAGAATGGAGATCATTAGCCCACCTCGCAAACACATGAAAGACCTGATTGGCTACTTCTGAAGGTAATGCAGCATTCGACAGCCCTAAAAGTATATCAACATAGTCAGATGTCTTGGGAACCTTTGGTACACCACATGCCTCAGTAAAGAATTCGCAAAGGCTGGGATAGGCTGAAGATAGCATCTTTCTTGGGAACATACTAATCTTATTCTTCATTGAAATGACTTTCTCTGTTATTATTTCAGAACAGCCTGTTGGGTCATGCCAATACAGATCTTTTGGGGACAAGAATTTTCCAGGAACAAAATCATTAGATCGAGCACGGTTTAATGGTGTAAATATAGAGGAGCAAGACAAAAACTCCCGTTTAATGTCAATCGTTGCAGTGGCAAAACCTTCTGACACAAAGGTGTAGAATTTGCACATCTGGTCCATACTTGCACTAAAAGAAGTCTGTGAAGCAATCCAGGATTTGAGGATCATCAAAGCATCACTATGTGATACCTTTATTTTGAATCCAATATCTTTCCCAAGTGATCTGCTGCATACCTGAGGTACAGCATATGGTGCCACACTACCAAGAATGGAACGCACATCTTCAGTATTATAAAATAAATCTGTTGCATAATGAAGGTCCTCATCCATAGCTGATGCTATCCATTTGAAGGTACGAATAGAATTCATAAAGGACGATTCAACTGCTATGTTTTCACCAGAATGTGTCGCATCTGCATGGATTCTAGCTTTTGCACTATAGTGAGCATCCCAGAATTTGTCAAGCACCTCCAGAAGATACACACAATTTTCTCGACATTTTTTGGAAGAAAATGTTGACAAAATGCTAACCAATTCTGGCGACTCCCAGTCATACACAATGCAGGGTGTTCCAGAATGATGACCTTGAGAAAGTCTTCCTGCAAGAGAAGAATCAGCCTGGGAAATATTTTTCTCAACTTTCACTACCTGAACAAAGTCAGTCACGCCCATCTCCTCAAAAAATTGCCTCCATTTTTTAAGTTCAAATGGTGGTAATGAATCTGAACCACGATTCATCAAATAGCAACTATCAAGTTCAATCCATTTTATTTCTACATTCAGAAGTAACTTGCATAAGTCCACAGAATTTCCATATTCTTTACTGAAGTGAATTGGTTCATCATATGGGCACTTGTAGCCATGGTTCGTAAGTAAGATAGGCCTCCTCCGTAGTTCTGACATTATCTCTTCTTTTTCAAAGTTACAGCTTGCACAAGGAGACTGAAGATGAAGCATTATAAAGCTCACATACTCTATCATCATTGTATTGGCCACATTAGCTTCTGTACTGTTAGACAAAGACACCAGGATGTGATTTTTTATAATATCATGTCCAGACAACTTCCGCACTCCCATCTTCAGCAGAATGTCCATCAGGTCGTTTGCTCGCATTTCTTCTGTGAGATACTTGTTTTGACAAGACACAGATAGAAGGCGGGGTTTTATTGTCCGAAGGTTACTATATAGAACAGGAAAGTTCAGCATACTACTTCTGGAATCAGGTTTTGAATTGAGAACATCATAAGGCAACCATATGGGTCCATCTGCTATAGAGCTAAATGAACCATCTGAAAGTGGAATACATGGTATTTTTCTGAGAGCACACAAAAGATCTTCAGGGCTTGTGGTTAATGGAAGATTTTTGGAAGAATGGTGCATCAATGATAAATGAAGAGAAATGAACCAAGCACATAGCCATTCCAGCCCCAGTGACTCAATACAACCATCAACTCGACAAATAGATGATATGATGTCAATCAAAACTTTTGGTCCATACTCATGAATACCTAGGGCCCTTGATAATGTATCAGATATGATTATATCTTTTGATAGGTACCCAAGACCAAGATGCTCCAGAAGTAAGCTATCAGAAATTAATATTCTAGTCTGTTCATCCCAACCTCGAAGAGTGTTGCATGGGTAGACCCATCGCGAACTAGAGCCCTCTAAAACCATGCAACGGGTGAGACGTAACTTTGAAAGGATCAAGTGAGGTAGCTGACAAAAGAATCCATGAACTTCTCCCACTAGAGGAACAAAACTCATGAAGGTTGTAACAGCCTTTCCAGGGCAACCCTGGAAGCAAGGAAGAGCACAAAAGGATTCTTGTGCACTGACAAACAAAGAAGGAAATTCAGACAGCAACCACTGGTTCCATGCATTATCAGCATCCACCTCCTCTCTGGAAGAAGGTAAGACAAAATCCCCTTGAAGAATGAATTTAAGACCATAATTCCTTAGAGGTAGAAAAGCAAATACGGGTTGTTGCTTCAAGTAAGGCTCATACTCCCCCATCTGAGTCTCCTGCAAAGTAAATGCCACAGCTATCTCTGTAGAGCACACATCATTGCGTACAATTGTGCCCTGTAACTTCTTGCTAACTACCAACCAACTCATCATATCATTCCCATTTGAAATTCTCACAATGCCGTTACCAAGGGCCTTCCTTCTCATAACCAATAGCGTATCATTCATCATGTTCTTAAACTTGATGCATTTTAGCCGATGAAGGAACAGGAGCAGAGATGGGTGGAGATCTGAAAACATGGATGCAATGGAGTGCATGCCGGTACCCTCCTTGAATTTTGATCTGAATGGAAGCACAATGCAAGTATTCCAGAAGGAAGAAGAGTCCTTGACATCTTCAACAGATAACATTCTACTTACAGAATCAGTATTGTAAGGTGCAACTGCAGTTGGCAATACAAAACCAATTTGGCCTTCTGTAATATCAAATTTCACGTGGAAACCATTTGAATGGATCTCGGGAGCATCAGTTACCCGAAATACTGATTTGAATCCAATGCCCTTATTTCCAATATAACCCTGGTTGGATCCTTTCTTTGTTGAGCTACCAATATCACAAAGTGCTCGAATATTTTCAGCGGAGAAGCCACTCTCGTTGTTGAGAACAACAATACCATTGTCTTGAAGAATAAATGCTAATGTGGGTTCAACATCCTCAACATAAGTATTATCATCAGCATTCTGTACCAGCTCAAGAAGTAGGTGAGAATCCTGGGAGTATAGTTCTTGTGAGAGACAATGAAGTGCTCTGCCAAGTCGAGCATGCTGCTTTTTCAACAAACTATTTTCAGTGCAACTTAAGGACTGATCCAAACCAAATTCTTCACGGCGTATGGTCTCAATAACTAGAGTTGCTTCCTCAGGATTCACTTCTCCCAAGGTGGGAGATTTGTTAGTAATGAATTCTGCAGTATCAAGCTTTGCTGTGACGATATTTAATACATTTTGGTTTTTACTTACAGCAACAATTTGATTATCCTTGCCAGGCAATGACTTGCTCCTCTTCATTATATCAACATCAGTAGCATTAAGCAAGTTAGAGTTTTCGCATATAGCAACTCCAGATGCAGTTGATGGATGCCTAGAAGAAGCATGCATTTCTATATTTGCATGAATTTCGTCAGTTAAACATAATCTGCGACAATCTTCAGCCCATTCTGCTACTCCAAGTGATAACCCAATATCATGAAGCATGCACAGCTGCCCGGTTTCAGTGGCTTCAAGCAAGATGGCTGAATAGCAATTCTTCGTGATAGTTCGAAGTCCTGCCAATAAAACATCTGCTGCAAGACTCCGGAATTCGGAAGGTAGATGACCAAGACAGTCAAGTACAAATTTGGCAACCAGATGAACTATGTCGTCAATGTCTTTTGACATATCAGACCAAATGTTCCTTGCACTAAAGGATTTGCCTTCAGATTTAGTGTTCAGCAAATCATTACCGTTGTCCATTATGATGCCTATTGCTCGTTGTGCATAACACTTCAACAAGGAAATTGGAGTGTTGGTAGAACCATTATAAACATGTAGCAAGGAAAGCAGCTTCACTGCCACTTGGAATGGTGAACATTGAATAATGCCTTCTAAAAATTGGTCAACAGTAGCAGATGGATCAACTCTAATAAACCTACCATCTGTGGTCACGATGCAAGCTAGATCTTGAACTGGGCCTGTATTCAGCAACCAGTGCATGAAGGAACCCAGAGAGGGAGCAAACAACAAATCCCAATGCGACCAAGTAAGTAGATCTGACAGCATTGGAGCCTTAAGCAAACATTTAATTGCTTCTTGTGAGGAGACTGTTACAGAACAAGATTGTTGAATATCATTCATTAGCCCATCAACGGTATCATGGTTACCTGGAACAATACCAGACCACCGTTTCTCCAACAAAGACATAGAAAACATGATATTATTTATTTCTATGTTTTTCCTTTGTCTCTCAATAGAATCAAGAAGTCCTTCTCCAGATTTATCTTGCACAATATCAAAGCTAATAGTTGGAAATTGCCTTTTGAGAAGCTTAGAGAAACTATCCTCCGAAAACTCACCATCTTCAAGCCAATTACCCCCAGCTTGGCAGAGTAAAACCTCAATCTGTTGCTGCAGTACAGAAACTTCCACTGAAGAATGTGTTAACTTTCCGACTTTCAAGAAACTGCTCAACTTAGGGGGTAAATGTTGCTCATGTTTCCCCAAGAACTCGAGGAAAGTACCATGGCCAAGAGCGCTAAATTGGTTGGCTGAAAATTTAGCAGTTATGCATGTTTCACAATCGAGAAGTGTTCTCAAGAATGTAGATTTTCTCACTTGCGAAGCATCGGTTCTGGACACTCCACGATTGGACTCAAAAAATTCAGTAATTCTCCTGATTACATCATCAGCTGTGACACTGCATCCAGGATCCTTGCTGCCAACATTGGTATCATTGTCTCCTTTCGCGACACATTTTGATTTTCTTTTACTTGGTGGTGGCTCCACTTCCATAAGCTCAGTGGTGGTATCAGGAATATTTGATGATGATTTATTCTCATTAAAGACATTGATCGCATCATAAAGACTATCCAGCAGACCACATCCCATCGCTCTAACGGCAACATTTAGGAAGCCAATGCCAGGGTACTCGGAGAAAAACTTTATTATTTTCTTCTTCTCCTTTGGTGTTTCCGCATAGTAATTTGCTAGCAACTCTAAAACCTGTTGAACTGGATGTTCACGGCATGCTTCCTTCCAGGTCGTTATGAATTTCTCCAACTTACCTATACTCAAGAAACAATTAGGTGATAACTCATGCTTTTGCATTTGAACCTTTTGCTTCTTCTTGGGCCGTTTGCATGAAGAGGTGGGGCTCCCATTCTCTTCAGATTTCCTTTTTTCTCTCGTATAACCCTTTTTACTACTCTCTTTTACCTTGCTACTATCCAAAGGTGGTTTTTTACTCGTTTCAGACTTTAAGCCAAGACGCTCCATTTCTTCTGTTTTTGAAGGATATGGACAGCTACTAACACGCTTATCAACATCCTTGTTATCAATAGCAGCAGAACCAGTTTTACTCTCACTGTTATCAACTGCATCACCCTCAGAACTAGAATCACCATCAGTTTCATCATCGGTTGAATCAAAATGGATGTGCTTATTGATACCTGGTAATTTCTTTATACGACTAGTTATAGCACTGAACCTCTCATCCAATGCCTGTTTGCTCAAATGAAATTTTCTATTTTTCACCAAATCCTTCTCACAACTACCATCACCTGAGCCACTGGTGTTGCCTTGAACTTTAACAGCAGACACTTCAGTTCTCCTGGCCTGCCGGAGAAAGGAAATATGCAACCTCAAGCTTTGTATTCGTACACCAAGGTTTTCCTTTCCAGAGACTGACTTTTGCTCCGCAAGATAATCCAAGAAGTTTTCCACTGTAATTTTCTTTTTAGAGTTGTCCATAAACTTCTGAAGCCAATTTATAATCTCGTCACTACTAAGCTTAGGTACCAAGGACAAATCGGCAGGTACTGAAAAATAATGTGCAACAAGTGGATGCTGAAGAAAAGGCCCCAACCCCAACTCTTCAAACTGTCCAATGCTCTCATTTTTGCATATCTCAGACTCTAAATCATAAACTGAAACAATTTTCCTTGCTGCAACATAGCAATGGATGAATGTATTCACCTTGCCCTCGACGAGGAAGAGGTCGCGCAGGAGGGGTACTTCATGGAGCTGGACACCAAGAGAGCCCCAGGAATCCACTTTGAGCGCCACCAGCACCGCCTGCGCTATCTTCCACCCTGTAACGCCCTCACCAGCCTTAATGATCTCGTCCCGCACCTTCCTCGCCGCCGCCTGCGCCCTCTCAAGAGCCCCCGGCTGCTGCTGCGGCTTTGGCTGCTGCTGCTGCTGCTGCTGCGGTGGGGGCAGGGGTGGCGGGGGATGCGCCTGCGGAGCCGGCTCCTTCTGTTTCTTCTTCTTCTTCGGCTGAGGCTGCCCCGGCGCGGCCGCGGCTGTCGCGGGGGCGACAGGGCGGTGCTGGATGCTAGGGGCGGCCGCCGGTGCTGCTGGTGCAGGGACGGCAGCGCGGTGCTGGAGATTATGGGTAGGGTTTTGGTGGTACGCAGATGAATGGAGGAGTTGCTGGTGGTGGTGGTACTGTTGCTGCTGCTGGTGATGGTAGGCGGCGAGGGCGGCGGGGTTGTGGAGCACATGATTGAGGACGAGATTGAGAGGGTTGGGGGCGTACTGGGGGTTGGGGACGTAGATGTAGGGGTTTACCCCCGCGGCCGCCGCCGCGGCGGCGGCGGAGGTCGAGGCGTCGCCCTGCCACGCGGCGGCGGGGTCCCGGGGGTCGTAGCCTCGGTGCGGCGGCGGCCATTGGTGGTTGTCGCGGCCGCTCATCGGGGCGGCGGGGTCGGGGAGGAGGGGTAGCGTGCGGCGGAAGAAGGAGCCAGCAACTCGCTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.620576
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0240000.1 3 33538711 A G
Osa03LNT0240000.1 3 33530324 C T
Osa03LNT0240000.1 3 33530876 A G
Osa03LNT0240000.1 3 33532207 A G
Osa03LNT0240000.1 3 33532974 T C
Osa03LNT0240000.1 3 33533311 C T
Osa03LNT0240000.1 3 33534523 G A
Osa03LNT0240000.1 3 33535098 C T
Osa03LNT0240000.1 3 33535334 T G
Osa03LNT0240000.1 3 33535804 C T
Osa03LNT0240000.1 3 33536689 G A
Osa03LNT0240000.1 3 33537447 T C
Osa03LNT0240000.1 3 33537511 A G
Osa03LNT0240000.1 3 33540772 C A
Osa03LNT0240000.1 3 33541246 C T
Osa03LNT0240000.1 3 33541593 A G
Osa03LNT0240000.1 3 33541766 C T
Osa03LNT0240000.1 3 33541802 T C
Osa03LNT0240000.1 3 33543379 G A
Osa03LNT0240000.1 3 33544008 C G
Osa03LNT0240000.1 3 33536695 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0240000.1 osa-miR5543 Cleavage 2.5 11.869 1 21
Osa03LNT0240000.1 osa-miR5788 Cleavage 4.0 18.35 1 21
Osa03LNT0240000.1 osa-miR5813 Cleavage 5.0 16.774 1 22
Osa03LNT0240000.1 osa-miR5834 Translation 4.5 11.429 1 21
Osa03LNT0240000.1 osa-miR1440b Cleavage 4.5 17.362 1 21
Osa03LNT0240000.1 osa-miR6254 Translation 4.5 18.364 1 21
Osa03LNT0240000.1 osa-miR6254 Translation 5.0 20.542 1 21
Osa03LNT0240000.1 osa-miR5079b Cleavage 4.0 14.019 1 22
Osa03LNT0240000.1 osa-miR156a Cleavage 4.5 23.612 1 20
Osa03LNT0240000.1 osa-miR156a Cleavage 5.0 16.474 1 20
Osa03LNT0240000.1 osa-miR156b-5p Cleavage 4.5 23.612 1 20
Osa03LNT0240000.1 osa-miR156b-5p Cleavage 5.0 16.474 1 20
Osa03LNT0240000.1 osa-miR156c-5p Cleavage 4.5 23.612 1 20
Osa03LNT0240000.1 osa-miR156c-5p Cleavage 5.0 16.474 1 20
Osa03LNT0240000.1 osa-miR156d Cleavage 4.5 23.612 1 20
Osa03LNT0240000.1 osa-miR156d Cleavage 5.0 16.474 1 20
Osa03LNT0240000.1 osa-miR156e Cleavage 4.5 23.612 1 20
Osa03LNT0240000.1 osa-miR156e Cleavage 5.0 16.474 1 20
Osa03LNT0240000.1 osa-miR156f-5p Cleavage 4.5 23.612 1 20
Osa03LNT0240000.1 osa-miR156f-5p Cleavage 5.0 16.474 1 20
Osa03LNT0240000.1 osa-miR156g-5p Cleavage 4.5 23.612 1 20
Osa03LNT0240000.1 osa-miR156g-5p Cleavage 5.0 16.474 1 20
Osa03LNT0240000.1 osa-miR156h-5p Cleavage 4.5 23.612 1 20
Osa03LNT0240000.1 osa-miR156h-5p Cleavage 5.0 16.474 1 20
Osa03LNT0240000.1 osa-miR156i Cleavage 4.5 23.612 1 20
Osa03LNT0240000.1 osa-miR156i Cleavage 5.0 16.474 1 20
Osa03LNT0240000.1 osa-miR156j-5p Cleavage 4.5 23.612 1 20
Osa03LNT0240000.1 osa-miR156j-5p Cleavage 5.0 16.474 1 20
Osa03LNT0240000.1 osa-miR160a-5p Cleavage 5.0 13.244 1 21
Osa03LNT0240000.1 osa-miR160b-5p Cleavage 5.0 13.244 1 21
Osa03LNT0240000.1 osa-miR160c-5p Cleavage 5.0 13.244 1 21
Osa03LNT0240000.1 osa-miR160d-5p Cleavage 5.0 13.244 1 21
Osa03LNT0240000.1 osa-miR166a-5p Cleavage 4.0 11.486 1 21
Osa03LNT0240000.1 osa-miR166e-5p Cleavage 4.0 11.486 1 21
Osa03LNT0240000.1 osa-miR156l-5p Cleavage 5.0 16.474 1 21
Osa03LNT0240000.1 osa-miR160e-5p Cleavage 5.0 13.244 1 21
Osa03LNT0240000.1 osa-miR171c-5p Translation 4.5 17.543 1 21
Osa03LNT0240000.1 osa-miR171f-5p Cleavage 4.5 19.094 1 21
Osa03LNT0240000.1 osa-miR172a Cleavage 4.0 21.499 1 21
Osa03LNT0240000.1 osa-miR172d-3p Cleavage 4.0 21.499 1 21
Osa03LNT0240000.1 osa-miR171i-5p Cleavage 4.5 19.359 1 21
Osa03LNT0240000.1 osa-miR435 Translation 5.0 17.423 1 20
Osa03LNT0240000.1 osa-miR815a Cleavage 4.5 18.474 1 21
Osa03LNT0240000.1 osa-miR815b Cleavage 4.5 18.474 1 21
Osa03LNT0240000.1 osa-miR815c Cleavage 4.5 18.474 1 21
Osa03LNT0240000.1 osa-miR1426 Cleavage 4.5 21.499 1 21
Osa03LNT0240000.1 osa-miR1431 Translation 4.5 20.439 1 21
Osa03LNT0240000.1 osa-miR1850.1 Translation 5.0 13.614 1 21
Osa03LNT0240000.1 osa-miR1852 Cleavage 5.0 11.629 1 21
Osa03LNT0240000.1 osa-miR1861g Translation 4.5 13.877 1 22
Osa03LNT0240000.1 osa-miR1877 Cleavage 4.5 14.932 1 24
Osa03LNT0240000.1 osa-miR2055 Cleavage 4.0 24.671 1 21
Osa03LNT0240000.1 osa-miR2090 Cleavage 4.5 13.983 1 22
Osa03LNT0240000.1 osa-miR2093-5p Translation 4.0 14.342 1 20
Osa03LNT0240000.1 osa-miR2094-5p Cleavage 4.0 18.283 1 21
Osa03LNT0240000.1 osa-miR2095-3p Translation 4.5 19.292 1 20
Osa03LNT0240000.1 osa-miR2095-3p Translation 5.0 14.769 1 20
Osa03LNT0240000.1 osa-miR2921 Cleavage 5.0 16.327 1 24
Osa03LNT0240000.1 osa-miR2923 Translation 5.0 15.06 1 22
Osa03LNT0240000.1 osa-miR2873b Translation 3.5 10.38 1 21
Osa03LNT0240000.1 osa-miR5076 Cleavage 4.0 13.995 1 22
Osa03LNT0240000.1 osa-miR5079a Cleavage 4.0 14.019 1 22
Osa03LNT0240000.1 osa-miR5157a-5p Translation 5.0 16.464 1 24
Osa03LNT0240000.1 osa-miR5157b-5p Translation 5.0 16.464 1 24
Osa03LNT0240000.1 osa-miR5488 Translation 5.0 10.969 1 21
Osa03LNT0240000.1 osa-miR5494 Translation 5.0 20.621 1 21
Osa03LNT0240000.1 osa-miR5498 Cleavage 4.5 12.771 1 21
Osa03LNT0240000.1 osa-miR5834 Cleavage 5.0 16.877 1 21
Osa03LNT0240000.1 osa-miR1846a-3p Translation 3.5 23.453 1 21
Osa03LNT0240000.1 osa-miR1846b-3p Translation 3.5 23.453 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0240000.1 3 nan Morphological trait Panicle/flower G249 RG418
Osa03LNT0240000.1 3 qSBR-3 Resistance or Tolerance Sheath blight resistance G249 G164
Osa03LNT0240000.1 3 qPES-3 Morphological trait Panicle/flower G249 G164
Osa03LNT0240000.1 3 QFll3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0240000.1 3 QSn3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0240000.1 3 Qbp1 Resistance or Tolerance Insect resistance R1925 R2443
Osa03LNT0240000.1 3 nan Resistance or Tolerance Drought tolerance R1618 G164
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus
Osa03LNT0240000.1 3 33540031 Panicle-type 13.80066681 -