© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0240100.1
AAATAATCCAAACACCATGCCACCACTTTATCATGAGCTGAACATAATACAGTACAGCGATGAGTATTCTGAAGTTCTCTACAAATTCCCATCGGGAAATGTCACTTTTTCAAGCCGTTGCCTATTGAACATGCTCACAATTCAACAACATTTATTAACATGGAAAAAAATAGTTTCCTGAAGTTCTCTATACGCCCCCAATGAATCATGACTCTTTATTCAAGTGGCTGTTTTTTTTTTGACACACTCATAATTCAATATTACCATTTGACAAGCAAGAGGGCATTTTTGAAGCGATTTTGAATTACCCTCACTGTTCGTATGGCTCTTCATCTCTACCTTGCTTTGGACTAAAGTCTACTATTGTTGTTGTTGTTGTGGTCCTTGTTGAATATGTCACGTCGGTCATAGCTTGCTGCGATTCGAGAGTTCTTTGCTCAGCTGATCCCTCAGTACTCTTCTTAGCAGCTTGTTTGAAGCTGTTCTTGGGAACTCAGGAACTATTTTGACATAGCTCACCTTGAAAAGAGGATTTAAGTTCTTTTGGATGGCTCTCTGAAATTTGCTCTTGAGAACATTTGCATCACATGGTGGTGATCTATCTTTTAGCACAGCCAAGATAGCCAGCTGTTCTGGTCCCCCACCAGCAGGTTTGATGCTAACCGCTGCTGTTTCTAGTAGAGCCTCATCGGCTCTATTACATATCCGCTCTATTTCCACGGAACTTGTCTTAATTCCTCCAAGATTCATAGTGTCATCTGCTCTTCCCTGCACAATATAGTAACCACCTACTGTCCTTTGGATTATATCTCCATGCCGTCGAAGTTGCCTTCCATTGTAAATGGGCATTCCATCAAAATAAACCTTATTGTTGTCAGCATTGAGAAGTCGATCTGTAGCGCCAAAATATAAAGGGAAGAGGCCCACTTCTCCAGCACAAGGTACATCATCAGGATATGGAGTTCCTTGTTCATCAAGTATGACAAACCCAGTGGACATGGATGCACCACTAAAAGCTCCAAAAGCTTGCGAACGCAGAAGACTGCCTTGAATGTATGACGATGCCAGCTCAGTACCCCCACAACATTCAATAATGGGCTTGTAAGAGGCACGCGAAGATAGCCATAGATCATCATCAATATCAGAAGCCTCTCCTGTCGTGGAGAGTACCCTGATTTTGGTCCAGTGAAGCCCTTCAGTAAAATTCCCAGCTTTCCATGACTTCACTAAGCTAGGTACACTTCCTAATATAGTGACACCAGCATCCTGTACAAACTTGCAAAAACCACGACCAAGTGGTGACCCATGATACAAAGCCAACGTTGCACCACTTAAAAAGCATGAGTACAAGAGTATAGGCCCCATAACCCATCCAAGATTAGTAGGCCAACAAAATATGTCCTGTGGCTGGATATCCAAATGCGCCCATGTATCACATGTGCATCTTATTGGAGAAAGTTGTGACCATGGGATAGCTTTTGGTTCTCCAGTTGTCCCTGAAGAAAATAGTATATTAGTTAGAGCGTCTGAAGGTTGATAAACTGTGGGATAAATGGACGACCTTCCAGCAGCACAAGAAAGGAAATCTTTCCAGGACATATCACCATTCCTTAGTGAAACCCCAAGAAAGCCTCCAGTTGCAGGAATTACAACAGCTTTAGATGAAGTCCCTTGCACAACACGGCTGTATAGTGGAACCTTCTTCCCTCCTCTAATTATGAAATCCTGAGTAAAAATAGCTTTCGCCTTTGACACACTCATGCGTGTACCAATCTCCTGAGGTGCAAAACTGTCTGCTATCGACACAACAACAAAACCACCAAGGACAATAGCCAAATATATGATGACTGCATTGCATGTCATAGGCATGTCTATTGCAATTCGATCCCCCTTTTGGAACATGGTATCAAGCGCAGTAGCAACTGTAATCACTTGATTGTGAAGCTCCTTCAGTGACATACGGTTCACTGGGTGATTGTCAAGACCCTCATCCCTCCAAACAATAGCTGTGCTGTCATCTGTCCTGTTTTGGGAAGGCCAAGGTAACAGACAACATTCAGCAATATTAAGCACAGCACCTTGGAGCCATGTTCCCCCTTTCCTTGATTTATCTGATGTATCTAGAATTGACTTTGGTTCTTGTTGGAACTTGATTGAGATCTCCTTCAGCACCATTGACCAGTAGACCTCTTGATGCTCTACGGAGAACTTGTGGAAGAGGTGAAAACTTGAAACTGGGTCCTTATATGATGATCCTAACAACCTAGGACCATGTGCTTCCATCAGTCTACCAAGATTTGTTTGTTTAGTGTCAATCTGTGACGGGAACCAGTACGGCGGCGGGCCCCGGGCGGCGCGATCCCAGCCGGCGTAGACGGAGTAGTAGACGAGCTGGTGGAGCGCGTGCGGGTGCTCCGGCCGCAGCACCCCCGCCGCCACGGCCTCCCACGCGGCGTCAGG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0240100.1 | 3 | 33633486 | G | A |
| Osa03LNT0240100.1 | 3 | 33632069 | A | C |
| Osa03LNT0240100.1 | 3 | 33635122 | C | A |
| Osa03LNT0240100.1 | 3 | 33635220 | A | G |
| Osa03LNT0240100.1 | 3 | 33635305 | G | A |
| Osa03LNT0240100.1 | 3 | 33635416 | C | T |
| Osa03LNT0240100.1 | 3 | 33635533 | T | C |
| Osa03LNT0240100.1 | 3 | 33635858 | C | T |
| Osa03LNT0240100.1 | 3 | 33634088 | G | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0240100.1 | osa-miR5534b | Cleavage | 5.0 | 16.948 | 1 | 21 |
| Osa03LNT0240100.1 | osa-miR166c-5p | Cleavage | 5.0 | 18.525 | 1 | 20 |
| Osa03LNT0240100.1 | osa-miR1432-5p | Cleavage | 4.0 | 19.405 | 1 | 21 |
| Osa03LNT0240100.1 | osa-miR1850.1 | Cleavage | 4.0 | 12.245 | 1 | 21 |
| Osa03LNT0240100.1 | osa-miR1877 | Cleavage | 4.5 | 8.267 | 1 | 24 |
| Osa03LNT0240100.1 | osa-miR2106 | Cleavage | 5.0 | 13.634 | 1 | 21 |
| Osa03LNT0240100.1 | osa-miR2122 | Translation | 3.0 | 17.941 | 1 | 22 |
| Osa03LNT0240100.1 | osa-miR5073 | Cleavage | 4.5 | 16.392 | 1 | 23 |
| Osa03LNT0240100.1 | osa-miR5144-5p | Cleavage | 4.5 | 15.347 | 1 | 21 |
| Osa03LNT0240100.1 | osa-miR5522 | Translation | 4.0 | 14.953 | 1 | 21 |
| Osa03LNT0240100.1 | osa-miR5144-5p | Cleavage | 2.5 | 23.733 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0240100.1 | 3 | qSBR-3 | Resistance or Tolerance | Sheath blight resistance | G249 | G164 |
| Osa03LNT0240100.1 | 3 | qPES-3 | Morphological trait | Panicle/flower | G249 | G164 |
| Osa03LNT0240100.1 | 3 | QFll3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Osa03LNT0240100.1 | 3 | QSn3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Osa03LNT0240100.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | R1618 | G164 |
| Osa03LNT0240100.1 | 3 | Qbp1 | Resistance or Tolerance | Insect resistance | R1925 | R2443 |
| Osa03LNT0240100.1 | 3 | nan | Morphological trait | Panicle/flower | G249 | RG418 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)