\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0240600.1

AGCAAGACTGCATCTCCTATCTATATATACCATTGTAGATTGTGCTCAGTTTACAGGTTCCGAATGAGTGGCAAAATTTACAGGGAACATGGACACTGTTTTGGCAAAACTTGTACATCACTATGATATATATCCGTTGCAAATCTGCAATCTGTCCTCATCACCTACACATACAACAATTGGTACTCGAGATACAGAGCTCAGCATTACAATCTGTGCCATCACCTACAGGAGATCACTGATATTGCTTGACAATTCACCATATCTCGTCATTGCAATCTGTTTCATCACCTAGAAAGTACAAGTAGTGGTCCTCCAGAGACCGATCCTGTGGCAGCACATCTTGCTCTCTTGACACATGCGAAGTGGACTCCTTAAGTCTCTGAACACGCAGCCTGCTATATGCGTCAATGTTCAGATGTGAGACCAAGAAGAGCTCTACCTCAGCGACAAACCGCTCCGTTTGGCCAAGGAGGAACGGCCTGGCAGCTTCCATGAGCAAGCTCTTGAATTCTTCCCTCCTCTTCTCTGGTGGAGCCATCTTCGAGGCATGCCCCTTCTCTTGCCTTTTCATGAAAGACTCGATCACACCATGGATGTGGTAGATAATAGCGTCAACATTTTCATCCCGTGTAAGAGCCTGTATTTCCTGTCTTAGCCAGGTTTGAAGCCAAATGTTCTTGCGAAGATACTTGCGTTGCTTCCAGAATTGCTGAACGCTGGAAGTATTGCCTATAATATCTCGTATACTATAGAATTGTGTAATCAAGTCGTGTGCATCTGAAAGATGTCTTTTTCTGGGGTCCTGATTTATGTAGTGCCGCTCAAATGATTCACCATTAAAACCATGTATAATAGACACATTCACGGTCTTGCAAAGGGGACATTGCACTGATGATAAAGGTTCGGCATGCTTGGTCGATACAATCTTTACCCACTGGCATATGCACTTGTAACAAAAAGAATGGAAGCAGGTGTCGAGGTACGCCTCGTCTAGGAAGGAATCGAGGCAGATGGGGCAAGCACAAGCAGCGCTCGCCGCCGCCATCTCCCCCTCCGCCGTGTTGCCGCCGCTACCACCGGAGGAGGATGCGGCGGAGGGAGAGGTCGCCGCCGCCGCCATCTCTGTCCGGAGAAGCCCCCCGGGTGCGAACTAGATGCGATCTGGACCGTCCGTTACCGATCA

Coding Potentia
Explanation CPC Score
noncoding -1.05762
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0240600.1 3 33892069 A G
Osa03LNT0240600.1 3 33892893 T C
Osa03LNT0240600.1 3 33893194 G T
Osa03LNT0240600.1 3 33893732 T C
Osa03LNT0240600.1 3 33894127 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0240600.1 osa-miR171h Cleavage 4.5 18.18 1 21
Osa03LNT0240600.1 osa-miR393b-3p Translation 5.0 18.338 1 21
Osa03LNT0240600.1 osa-miR2097-3p Translation 5.0 20.718 1 22
Osa03LNT0240600.1 osa-miR395f Cleavage 4.5 11.686 1 21
Osa03LNT0240600.1 osa-miR395v Cleavage 5.0 11.686 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0240600.1 3 nan Resistance or Tolerance Drought tolerance R1618 G164
Osa03LNT0240600.1 3 qPES-3 Morphological trait Panicle/flower G249 G164
Osa03LNT0240600.1 3 nan Morphological trait Panicle/flower G249 RG418
Osa03LNT0240600.1 3 Qbp1 Resistance or Tolerance Insect resistance R1925 R2443
Osa03LNT0240600.1 3 qSBR-3 Resistance or Tolerance Sheath blight resistance G249 G164
Osa03LNT0240600.1 3 QSn3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0240600.1 3 QFll3 Morphological trait Culm/leaf G249 RG418
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus