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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0240800.2

CCCGCTTTTGTCCTGATTTTTCTCGTTCTTTCCAACACACGCGTAGAGAGAGAGAGAGAGAGAGAGATAGGGGGTGCGGGAGGTAGAGTGGGAGAGAGATTTAGAGGCGATTTCGCCGCGGTGAGGAGTGCGGCTCGCCGTGGCGGAGATTTCGTCGTGCCGGTGCTGATCTGTGTCGTGTTTGAGTTTGTTTTTCGCCGATCAATCTCATTTGACAGAAATGTAGATCAATATTCAGAAGATTTGAGTTAAGTTTTGTGATTTATTCTGATGAAGATTCATATCAAGAAGGTTCAAAGAAGATTCAGAACAAGAATCAGAAGACTAAACCAAAGAAGAATGAATTTTAATTTGGATGCAATTTGAAGATCAAGAAACAAATGAACAAGTCACTGGATTCAGAAGAAGAAGATTTGTTAAATAGATTTGATGCATCAACCAGATTCAGAAGATTCTTTTTCTTCTTGAATAGTGTTTTGGGTTATCTATCTTTGTTAGTGTTTTGGGTTTTGTATATATTGTTAGTTAAGTTGCTGGGCTAAATTTGAGTCAGTTCTTTTGTTTTGGGCCTTTAAATTGACTACAGTGTTAATTTGGGCTTTCATTTGATGTAAATTTTGTATTTGGGCTCAATCTGGACTATTTGATTGGGTCGAGTTGTATTTGAGCCCTTCGAAAATGGGCTTCCAAACCTATTTGTTATTGTTTATCTATGTATTTTTAATTTTTATTTGTCAAATAATAGTAGCTGTTGGATCTAGATCTGTTGGTTAAAAAATTTGGTTAAAAAAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.9174
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0240800.2 osa-miR5526 Translation 5.0 20.722 1 21
Osa03LNT0240800.2 osa-miR166i-5p Cleavage 4.5 21.524 1 21
Osa03LNT0240800.2 osa-miR1440a Cleavage 5.0 21.443 1 20
Osa03LNT0240800.2 osa-miR5339 Cleavage 4.0 17.53 1 21
Osa03LNT0240800.2 osa-miR5518 Cleavage 4.5 22.781 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0240800.2 3 nan Resistance or Tolerance Drought tolerance R1618 G164
Osa03LNT0240800.2 3 Qbp1 Resistance or Tolerance Insect resistance R1925 R2443
Osa03LNT0240800.2 3 nan Morphological trait Panicle/flower G249 RG418
Osa03LNT0240800.2 3 qPES-3 Morphological trait Panicle/flower G249 G164
Osa03LNT0240800.2 3 qSBR-3 Resistance or Tolerance Sheath blight resistance G249 G164
Osa03LNT0240800.2 3 QFll3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0240800.2 3 QSn3 Morphological trait Culm/leaf G249 RG418
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus