>Osa03LNT0240800.3

CCCGCTTTTGTCCTGATTTTTCTCGTTCTTTCCAACACACGCGTAGAGAGAGAGAGAGAGAGAGAGATAGGGGGTGCGGGAGGTAGAGTGGGAGAGAGATTTAGAGGCGATTTCGCCGCGGTGAGGAGTGCGGCTCGCCGTGGCGGAGATTTCGTCGTGCCGGTGCTGATCTGTGTCGTGTTTGAGTTTGTTTTTCGCCGGTGAGGAGCTCCTGCTCAACGGATTTTTCCACTGTGTCGAGTTATTCGTCGTTGAAGATTCATTTGGCCAGTTTTTTTTTGTTTTTTTTCATGTTCATCACTGCCTCCTCCTCTATTTTTTCGCCATGCCGGTGCCGATCTGTTCGTTGACATCGTTTTTGTCGGTGAGGAGGGTATGATGTACCACGTTTTCCACTGTGTCGAGCTGGTCATAGACGTAGGTTTTTTTTTTGGCGATTTGTTCATGTCGTTCTCCATTTTTTCCTTCCAATAGATCTAGCTTGGACATGCACCATTTATGTTTGATTTTTTTGATTTTTTGTGAATAGGTTGTGTTCTAGATTCATTTGTTTTTGTTTTTTTCATGTTCCTCCCCACGTCCTTCTTCATTTATTTCTTCGAATAGATCTAGCTAGGACTTGCACAAATTATGTAACCCCATCTCATTTGCTACTTCCCTAACCTATTTGTTTTTTTAGATCTGCTTTGTTTCATGTTTTCAATGCTATTTTTATTTTTTTTTCATGTTGTTTAATGTTCGATTTGCAGCTGTTTTCTGGTTTTTTTTTTGTCTTACTTTGTGTATTTGTTATATGAGGCGCAGATCTGCTTAATTCATCGAAGATGGGTAATGATAAGGACATTGAGGATATTTTGTCTGATTCTATTTCTTCTGAGTCTGATAGTTCTACAAATGATGAATGCTATTCTGATAGTGATCTATATGCCTGTTTCTTAAGAAAATTCAAAACAAGTTAGTGTCTGACATGACAATCTACCTTATATCAATCTCATTTGACAGAAATGTAGATCAATATTCAGAAGATTTGAGTTAAGTTTTGTGATTTATTCTGATGAAGATTCATATCAAGAAGGTTCAAAGAAGATTCAGAACAAGAATCAGAAGACTAAACCAAAGAAGAATGAATTTTAATTTGGATGCAATTTGAAGATCAAGAAACAAATGAACAAGTCACTGGATTCAGAAGAAGAAGATTTGTTAAATAGATTTGATGCATCAACCAGATTCAGAAGATTCTTTTTCTTCTTGAATAGTGTTTTGGGTTATCTATCTTTGTTAGTGTTTTGGGTTTTGTATATATTGTTAGTTAAGTTGCTGGGCTAAATTTGAGTCAGTTCTTTTGTTTTGGGCCTTTAAATTGACTACAGTGTTAATTTGGGCTTTCATTTGATGTAAATTTTGTATTTGGGCTCAATCTGGACTATTTGATTGGGTCGAGTTGTATTTGAGCCCTTCGAAAATGGGCTTCCAAACCTATTTGTTATTGTTTATCTATGTATTTTTAATTTTTATTTGTCAAATAATAGTAGCTGTTGGATCTAGATCTGTTGGTTAAAAAATTTGGTTAAAAAAT

Explanation	CPC Score
noncoding	-1.01064

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0240800.3	osa-miR5526	Translation	5.0	21.238	1	21
Osa03LNT0240800.3	osa-miR166i-5p	Cleavage	4.5	21.524	1	21
Osa03LNT0240800.3	osa-miR1440a	Cleavage	5.0	21.443	1	20
Osa03LNT0240800.3	osa-miR1846e	Cleavage	4.0	15.026	1	20
Osa03LNT0240800.3	osa-miR2923	Cleavage	4.0	7.514	1	22
Osa03LNT0240800.3	osa-miR5076	Translation	5.0	13.983	1	22
Osa03LNT0240800.3	osa-miR2863c	Translation	5.0	15.267	1	24
Osa03LNT0240800.3	osa-miR5339	Cleavage	4.0	17.53	1	21
Osa03LNT0240800.3	osa-miR5518	Cleavage	4.5	22.79	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0240800.3	3	nan	Resistance or Tolerance	Drought tolerance	R1618	G164
Osa03LNT0240800.3	3	qSBR-3	Resistance or Tolerance	Sheath blight resistance	G249	G164
Osa03LNT0240800.3	3	Qbp1	Resistance or Tolerance	Insect resistance	R1925	R2443
Osa03LNT0240800.3	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0240800.3	3	QSn3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0240800.3	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0240800.3	3	qPES-3	Morphological trait	Panicle/flower	G249	G164

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus