>Osa03LNT0240900.1

CATAAACTGTTGCTAACGCAACGGGGGATGCGCAAGAATCAGTAGTTCTCAACACAGAAGAAGCACACCAGTCCAGCAGTAGCGCATGAGGTGCTGGATGCATCAACTGCTCATGGCAGATGTAGCCTTGCGAGCACGTTCGGTTCCTGCCAAGGAAATCCTACATATCTAGCTAGACACAGGTAGTTAATGGCAACTAGAGTTCTGTCCGAATCAGCCGTGTGCTTCGGCGTGGAATGAATCTTGCATGATCGCTGAGCCGCCCAAAAATTGCATCCCCGAACTGCAATCACATCAGCGAGGCCTTCAATAGATGAGTGCACTCGCCACTCCTAAGCTGAGACCTCCGGGTCTTGTTTTTCCGGCTCTTCTGCTTCTGATATTAGTGAGGCTGACTCCGGGTCCTGTTCTTCCTCCTCTTCTGCTGCTGATATTAGTGAGGCTGACTGGATCTTCCCAGCATGTTCCAGCCTCATCAGAATGACTCCCCTTGCGGAACGAGACCGGATGGATATATCTTTGACTTTGATTCTGTTTACAGTACCACTCTGGCTAACTAAAACCACCTGTTCGTCACTTTCACCGTCATCAGTAAGTGAAAATCCAACAACAAATACAGCAGCTAAGCTACAGTCTGGTGGAAGCTTGTAGCCTTGCAAGCCCACTCTGTTGAAATTTCCTTGCCGGAATGCATTTAGGGGCACACGCTTCCCAATACCATTATCAGCTATGAAAAGCAGCCATGGCGGACTCAAATCTCTGACTCTGCTGTAAGTTTCAGGCATGTTATGCGACGTTGCTGGAATTATATCCATGGATGCCATCTTGTCACCTTCCTTTAGCTTCATTGCCAGGACGCCCCTTGTTTTCCTTCCAAGGGCGCGAAGCTTGTTGCATGTATTAACTATAACCATCCCATTTTGTGAAGCCAAAGCAACAAGGTCATCATCCCCACAACGACGAACCCACTTCAGCTCATCACCAGGAGCCAGTTGAATTGAAATGATCCCAGAAGTCCTGATTGCTGAGAAAGCATTAAGAGGAACTTTCTTGATATAACCGTTAACGGTCAGCATCACAAGATACTGATCTTCACCAAATTCATTTACAGGAACGATGGAGGTTATTCTCTCCCCATCGGACAAAGAAAGCAGCTGTACCAGTGGAGTTCCAGTCGCAGCTCTTGTGCATTCAGGTATCTTATAAGCACGTGCTGAGTATACTATTCCCTTGTCACTGAAGTAAAGGACATGATCATGTGTTTGGCAGACAATGAAATCGGATGTATTGTCGTTCATTCGCATCTTTCCAACAGATTTTCCGATCGTTCCCCGGTTTTGTAGATTGAAGGTATTAGGCTTCATACGCTTAACGTAGCCCTTCTCACTAAGAATCAAAAGCATTTCCTCATTAGGAATAATATCAAGATCATCAACTTCAGTGCTTGCTGAATCTTCTATGAAAGAACGTCGTGGGGTAGCAAATTTGTTCTTTAAGTCAGTTGCCTCTTGTAAAATAAGCTGAAAAATAAGCTTCTTGTTAGACAGGAGCTCATTTAACTTGGAGATCTCCTCTGACAAAGATTTAGCTTCGTCAACAAATTTTTTCCGCTCAAGGGAAGTAAGTTTCCTTAGTGTGATATCCAATAGGGCTTCTGCTTGCTTGTCAGACAGACCAAATTCCTTGATTAAAGATTCTCTTGCCATTGCATGATTGGATGTTCCTCTTATTATTTGGATAACAGAATCCAAATTGTCAAGACCAATAACAATGCCCTCAACGATATGTTTCCTTTCCAGAGCTTGTGAAAGCTTAAATCTTGCACGCCTTTCAATAACAGAACATCTGAAGTCAATGAATGCCTGAAGAATTTCCTTCAGTCCCATCAATTTTGGCTGCCCATCAAGGATAGCTACCATGTTGCAGCTAAAACTAGATTGCAGAGCTGTATGACGGTACAAGTTGTTCAGAACTATGGCAGGATCTGCACCTCTTTTCAGCTCTATTACTACACGCATTCCAGAGCGATCACTTTCGTCCCGAATATCACTGATGCCTTCTAATACCTTTTCTTCAACAAGCTCAGCTATCCTTTCAACAAGAGTGGATTTATTCGTTTGGTATGGAACCTCTTTAATTATAATGGCAGAGCGTTTGCTTTTCACATCAATTGTTTCGATGTCAGTTTTGCCTCTCATAACAACTCGACCACGCCCAGTTTTATAGGCCTCCAAAATACCTTGATTTCCCACGATTGTCCCTCCTGTAGGAAAGTCAGGTCCAGGCATGCATTCTAGTAGTTCTTGGAGAGTAGCTTCAGGGTTTTCAATCATAACAGAGAGCACATCAACAAGCTCACCCAGATTATGAGGAGGAATATTTGTTGCCATTCCAACTGCAATTCCAGAAGAACCGTTCAACAATAGAGATGGAACACGAGCTGGCAACAGAGAAGGCTCTTTCTGTGAATTATCAAAGTTTGGGACGAAGTCAACTGTATTCAACTCCAGATCAGTCAGGAACATGGCTTCTGTTAGTGAATCCAAGCGGCACTCTGTATATCGCATTGCGGCAGGAGGATCAGCATCTATGGAACCAAAATTTCCATGACCTTGAACAAGTGGATACCTCATTGAGAAGTCCTGAGCCATCCGTACTAAGGTTTCATATACGGCCGAATCTCCATGTGGATGGAACTTACCTAGTACCTCACCGACAACCCTTGCACATTTTCTGAATGGTCTACGGGATGCAAGACCCATCTCATGCATAGCATAAAGTATCCTGCGGTGCACTGGCTTGAGCCCATCTCGGACGTCGGGGAGCGCGCGGCCGAGCAGCACCGACATGGCGTAGGCCATGTACGCCTCGGTGGCCTCCTTGTGGAGCTCCACGGGCACCACCCGCTCCTTCACCGCCGCCCCGCCCTCACCCGCCGCCGCCCGCTCATCGCGGCCCGCGCGGAGGGGCTGCACGGAGCGCGAGCCGTCCGAGGAGGAGGATGAGGAGGAG

Explanation	CPC Score
noncoding	-1.03623

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0240900.1	3	34023318	C	G
Osa03LNT0240900.1	3	34011869	A	G
Osa03LNT0240900.1	3	34012329	A	G
Osa03LNT0240900.1	3	34012777	T	C
Osa03LNT0240900.1	3	34013550	A	G
Osa03LNT0240900.1	3	34013900	T	C
Osa03LNT0240900.1	3	34014329	C	T
Osa03LNT0240900.1	3	34014337	A	T
Osa03LNT0240900.1	3	34014430	A	G
Osa03LNT0240900.1	3	34014832	C	T
Osa03LNT0240900.1	3	34015866	A	G
Osa03LNT0240900.1	3	34017447	G	T
Osa03LNT0240900.1	3	34018043	A	T
Osa03LNT0240900.1	3	34018178	A	G
Osa03LNT0240900.1	3	34019974	C	T
Osa03LNT0240900.1	3	34020777	G	T
Osa03LNT0240900.1	3	34021203	C	T
Osa03LNT0240900.1	3	34022694	A	G
Osa03LNT0240900.1	3	34022915	A	G
Osa03LNT0240900.1	3	34023092	A	G
Osa03LNT0240900.1	3	34023632	G	A
Osa03LNT0240900.1	3	34023780	A	T
Osa03LNT0240900.1	3	34024418	T	C
Osa03LNT0240900.1	3	34020250	G	C
Osa03LNT0240900.1	3	34018113	T	G
Osa03LNT0240900.1	3	34020166	G	C
Osa03LNT0240900.1	3	34011240	G	C
Osa03LNT0240900.1	3	34011423	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0240900.1	osa-miR5530	Cleavage	4.5	19.82	1	21
Osa03LNT0240900.1	osa-miR5540	Cleavage	5.0	12.455	1	21
Osa03LNT0240900.1	osa-miR397b	Translation	4.5	18.663	1	21
Osa03LNT0240900.1	osa-miR159a.1	Cleavage	5.0	19.52	1	21
Osa03LNT0240900.1	osa-miR159b	Cleavage	5.0	19.52	1	21
Osa03LNT0240900.1	osa-miR159c	Cleavage	4.0	19.52	1	21
Osa03LNT0240900.1	osa-miR159d	Cleavage	4.0	19.52	1	21
Osa03LNT0240900.1	osa-miR159e	Cleavage	4.0	19.52	1	21
Osa03LNT0240900.1	osa-miR159f	Cleavage	5.0	19.52	1	21
Osa03LNT0240900.1	osa-miR171h	Translation	4.5	15.55	1	21
Osa03LNT0240900.1	osa-miR171h	Translation	4.5	18.895	1	21
Osa03LNT0240900.1	osa-miR417	Cleavage	5.0	15.399	1	21
Osa03LNT0240900.1	osa-miR1425-5p	Translation	4.0	19.633	1	21
Osa03LNT0240900.1	osa-miR444b.2	Translation	4.5	23.827	1	21
Osa03LNT0240900.1	osa-miR444c.2	Translation	4.5	23.827	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0240900.1	3	nan	Resistance or Tolerance	Drought tolerance	R1618	G164
Osa03LNT0240900.1	3	Qbp1	Resistance or Tolerance	Insect resistance	R1925	R2443
Osa03LNT0240900.1	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0240900.1	3	qPES-3	Morphological trait	Panicle/flower	G249	G164
Osa03LNT0240900.1	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0240900.1	3	qSBR-3	Resistance or Tolerance	Sheath blight resistance	G249	G164
Osa03LNT0240900.1	3	QSn3	Morphological trait	Culm/leaf	G249	RG418

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus