© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0241500.1
ATAGTACTCCCTCCGTTTCATATTATAAAAGATTTTGGGTACATATAATACATCTTATAGTATTAAGATGTGTCGCATAATCTAAAAAGCCTTATAATATAGGACGGAGGGAGTAGTATGGAGTAGGCAACAGAATGTTGATTAGAAGTGGCGAGTGGACGAGACGAGCCACTGACCGTGTTCTGTTTGTTCCAGGATCGATAACCGCACTCCTTACAACATGCCAATGCCAAAGTGCCAAATGCATTCGGAGGTAATACTAATAAGGGCAGAAGTTAGCTTAATTTCTATCATGCAGCTCCGGAATACTAAAGTACACTGCTGGGGGTTAACCATACAATGTTTTGACAAAAATCAGTCCCTGTAATTAAATTCCATGAGTGTAAACATGTGGGTTCATGCAATTTCCAAAAACTAATACTGATGCGTCATGCCTTTCGATTTCCTGGTTACCGAAGTTCAATGTCTTTTTTTCAACCATAGTGGTCGCATCTCGCATGTCTTCACACGAAGTTGCACTGTTTCATTTTTCTTGTCAGAAGCTCCAGCAGATCTGCAGACTCATCTTCCTAACAACGTTGGCCATCTCCTCACGCTTCGTCTTAGCTCTCTAGCTAGTGTGCTTTTTGCTACCTTCAGCGCACGACTGCACGTTTTTCTTTCTTTTCTGGCTTTCAGAAGCGCGGTGATATGTTTCTCATGTGGTGCTAACCCGGCTACTTGCCTAGGCAAGTAGGAACAAAAAGGACCCTCTTGTTAGTTTTCTGAAACAAAATTCAATATTACACTCATAATGCAACTGTATCTTTTCATATGGAAAATGAAAGCTCGTTGCTTTCATTAATGCTGTTCAAAAAATTACAAGATAACAATATAGATTAAGAAAATCCAATAACTTCTTTAATGAACAGCATAAGTACACTGCGGGAAAGCCACTCAATCATGCATGCATCATGTTTATTACACATGGCAACAGTGTAACATATGCAAAACAAAAAGAAAAAGAAAAGAGGATAAGCTTCTAAGACAAGTGACTCGCCACCAATTTTATACTGAAAAGCTGAGGACTGGAAATAAGACACAAAATAAATGAGCTAAACCTAACAGTAGAATTCCCTTAGGGCACTTGGTTCAGCGTTTCTTACTTAAACGCTTTAGCAAATTTTGGTTTTAAAAATTTGATCATTGAATCAACTAATTTTCATCCTGGAGATCAAGATCTCAACAACATATATGCAAAATAAAATACTCCTTTTTTGCAAGTGTGTAAATAAATTTCAAGGACATGGTTAATCATAGCACCTGCAAGTCACCACAAGTATAGCTAAAGGTATAGAAAGCACTGAAGCCAGCATACCATGTTCTCATACATGCAGCAGTAGATCAACAGATAGTCACATAGTCATTGGAATTTCCACAGACAATATGTGCTTCACACGGCACATCCAAGTTCATCAAGTAAGAACCATCAAGGGAAAAACTATCTTCAGGGATCGTGCAATCCTAGTATACAATTATACACAAATATACTTCAGAAAGCAAAGCGGTATCTAGATTGTTAACTGATTCAGCATCGTGGCTAATGTGACCAAAAGATAACGCGGCGATCAAGCACAATCGCAGAAGTACAGTGACATCTTCGGATTCTGAAAATGTCTCTATCTGATCAAGCACAGCCGCATCACAATCGTACTAGTATGATTTGCTAGCATTTCAAAGACTTACGGTACTAATTAACACTGCAGTCGAGCTCGAGCATAGCAATTTCAATTTTCAACACAAGAAATAAACAATCAGGTTGGCGGCGGGCAACCTTACTCATTTACAGATCCCAATAGTCATAGCCATTAAGCCGTAGCCGATGGATCTCAGACCAACAAACAGCGCCGCCCTTCGCCGGCGGCGGCGCCATCTTACCGTCCCTGTGAGCTTACGCCGACGGAGTGTGAGAACGGCGATGGCGACGGCGGCGGCGGCGGCGCTAGGGTTTAGGCGGCGGAGAGGGGTTGCTGCTAAGTAGGAGTGGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0241500.1 | 3 | 34469202 | T | C |
| Osa03LNT0241500.1 | 3 | 34470298 | T | A |
| Osa03LNT0241500.1 | 3 | 34471824 | A | G |
| Osa03LNT0241500.1 | 3 | 34472594 | T | C |
| Osa03LNT0241500.1 | 3 | 34472724 | T | C |
| Osa03LNT0241500.1 | 3 | 34473159 | C | T |
| Osa03LNT0241500.1 | 3 | 34470956 | A | C |
| Osa03LNT0241500.1 | 3 | 34470383 | T | A |
| Osa03LNT0241500.1 | 3 | 34470576 | T | A |
| Osa03LNT0241500.1 | 3 | 34470644 | T | C |
| Osa03LNT0241500.1 | 3 | 34470343 | G | A |
| Osa03LNT0241500.1 | 3 | 34470384 | T | A |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa03LNT0241500.1 | DTM_#DNAt_MULE_japo_Os0084 | Chr3 | - | 34470312 | 34470684 | 372 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0241500.1 | osa-miR6253 | Translation | 4.5 | 14.198 | 1 | 22 |
| Osa03LNT0241500.1 | osa-miR6255 | Cleavage | 4.0 | 14.132 | 1 | 22 |
| Osa03LNT0241500.1 | osa-miR426 | Cleavage | 3.5 | 7.634 | 1 | 21 |
| Osa03LNT0241500.1 | osa-miR396e-3p | Cleavage | 4.5 | 14.4 | 1 | 24 |
| Osa03LNT0241500.1 | osa-miR816 | Cleavage | 3.5 | 18.12 | 1 | 20 |
| Osa03LNT0241500.1 | osa-miR1439 | Cleavage | 5.0 | 24.971 | 1 | 21 |
| Osa03LNT0241500.1 | osa-miR3981-5p | Cleavage | 4.5 | 19.045 | 1 | 21 |
| Osa03LNT0241500.1 | osa-miR5339 | Translation | 4.5 | 20.134 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0241500.1 | 3 | nan | Morphological trait | Panicle/flower | G249 | RG418 |
| Osa03LNT0241500.1 | 3 | qSBR-3 | Resistance or Tolerance | Sheath blight resistance | G249 | G164 |
| Osa03LNT0241500.1 | 3 | spp3.1 | Morphological trait | Panicle/flower | RM130 | RG1356 |
| Osa03LNT0241500.1 | 3 | yld3.2 | Morphological trait | Seed | RM130 | RG1356 |
| Osa03LNT0241500.1 | 3 | qPES-3 | Morphological trait | Panicle/flower | G249 | G164 |
| Osa03LNT0241500.1 | 3 | QFll3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Osa03LNT0241500.1 | 3 | QSn3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Osa03LNT0241500.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | R1618 | G164 |
| Osa03LNT0241500.1 | 3 | Qbp1 | Resistance or Tolerance | Insect resistance | R1925 | R2443 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)