>Osa03LNT0241500.2

ATAGTACTCCCTCCGTTTCATATTATAAAAGATTTTGGGTACATATAATACATCTTATAGTATTAAGATGTGTCGCATAATCTAAAAAGCCTTATAATATAGGACGGAGGGAGTAGTATGGAGTAGGCAACAGAATGTTGATTAGAAGTGGCGAGTGGACGAGACGAGCCACTGACCGTGTTCTGTTTGTTCCAGGATCGATAACCGCACTCCTTACAACATGCCAATGCCAAAGTGCCAAATGCATTCGGAGGTAATACTAATAAGGGCAGAAGTTAGCTTAATTTCTATCATGCAGCTCCGGAATACTAAAGTACACTGCTGGGGGTTAACCATACAATGTTTTGACAAAAATCAGTCCCTGTAATTAAATTCCATGAGTGTAAACATGTGGGTTCATGCAATTTCCAAAAACTAATACTGATGCGTCATGCCTTTCGATTTCCTGGTTACCGAAGTTCAATGTCTTTTTTTCAACCATAGTGGTCGCATCTCGCATGTCTTCACACGAAGTTGCACTGTTTCATTTTTCTTGTCAGAAGCTCCAGCAGATCTCATCTTCCTAACAACGTTGGCCATCTCCTCACGCTTCGTCTTAGCTCTCTAGCTAGTGTGCTTTTTGCTACCTTCAGCGCACGACTGCACGTTTTTCTTTCTTTTCTGGCTTTCAGAAGCGCGGTGATATGTTTCTCATGTGGTGCTAACCCGGCTACTTGCCTAGGCAAGTAGGAACAAAAAGGACCCTCTTGTTAGTTTTCTTACTCATTTACAGATCCCAATAGTCATAGCCATTAAGCCGTAGCCGATGGATCTCAGACCAACAAACAGCGCCGCCCTTCGCCGGCGGCGGCGCCATCTTACCGTCCCTGTGAGCTTACGCCGACGGAGTGTGAGAACGGCGATGGCGACGGCGGCGGCGGCGGCGCTAGGGTTTAGGCGGCGGAGAGGGGTTGCTGCTAAGTAGGAGTGGC

Explanation	CPC Score
noncoding	-1.22326

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0241500.2	3	34469202	T	C
Osa03LNT0241500.2	3	34470298	T	A
Osa03LNT0241500.2	3	34470956	A	C
Osa03LNT0241500.2	3	34471824	A	G
Osa03LNT0241500.2	3	34472594	T	C
Osa03LNT0241500.2	3	34472724	T	C
Osa03LNT0241500.2	3	34473159	C	T
Osa03LNT0241500.2	3	34470343	G	A
Osa03LNT0241500.2	3	34470383	T	A
Osa03LNT0241500.2	3	34470384	T	A
Osa03LNT0241500.2	3	34470576	T	A
Osa03LNT0241500.2	3	34470644	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa03LNT0241500.2	DTM_#DNAt_MULE_japo_Os0084	Chr3	-	34470312	34470684	372

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0241500.2	osa-miR6253	Translation	4.5	14.197	1	22
Osa03LNT0241500.2	osa-miR6255	Cleavage	4.0	14.131	1	22
Osa03LNT0241500.2	osa-miR396e-3p	Cleavage	4.5	14.357	1	24
Osa03LNT0241500.2	osa-miR816	Cleavage	3.5	18.12	1	20
Osa03LNT0241500.2	osa-miR1439	Cleavage	5.0	24.971	1	21
Osa03LNT0241500.2	osa-miR3981-5p	Cleavage	4.5	19.045	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0241500.2	3	spp3.1	Morphological trait	Panicle/flower	RM130	RG1356
Osa03LNT0241500.2	3	yld3.2	Morphological trait	Seed	RM130	RG1356
Osa03LNT0241500.2	3	qPES-3	Morphological trait	Panicle/flower	G249	G164
Osa03LNT0241500.2	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0241500.2	3	QSn3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0241500.2	3	nan	Resistance or Tolerance	Drought tolerance	R1618	G164
Osa03LNT0241500.2	3	Qbp1	Resistance or Tolerance	Insect resistance	R1925	R2443
Osa03LNT0241500.2	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0241500.2	3	qSBR-3	Resistance or Tolerance	Sheath blight resistance	G249	G164

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus