\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0242200.1

GCATTGTTCAAAAAGAAAAAAAAAAGCATCAATTGATCAATACATGGCCAAGCGCATTTGCCTGGTTTCTAATCCATCCATAATTCTCGATGTATAGCATTTCAGTGTTTCACCATTTCTCCACATATAAGAATGTGTACAGGAAAGCAGTATAAACCCATCAGCGACAAGGGGTGTATAGAAGATAAATTCTCGGTCAAAACTAATGTCAACGGAAAATAAGACGAAATACCAGTTTCATGCTCTACCAAAAAAATCCATGTTTCCTTTCCATTTTACTGGCGTGTGACTGAATTTAGGCCTTCCTCTGTTGCCATTTGAGAAAATTCCATTTTACTGGCTTGTGACTGAATTTATGCCTTTGTTGCCATTTGAGCAATCTAACCCTAATGATGATCCACTGGATTTTCGCTACTGCTTGGTGTAGATGAGGTACACAAGAGCGCCCAGATGCTGTACTTCCAGGCCTGCCTTTTCGCATTCTTCGAAGAAGAGGGACTGGTCCTTGCCAATTCTTCTACGGCAGCTCATCAGAAAAATGGGAAACTTAACAGGCACTTGAGTTCCTGATTTGTTCGTGATGGCTGTACTGGCACTTGAACCAGCATTCTGACTGCAGCCCTTGTATTCTTTCAGGAGAAAGGATAATGTTCTGGTTAGGTTTGGATATTGTTTGACATACAATAAAATGTCACTGGCGATAACAATGTCCCAATCTGGTATGAGAACTGGAAACTGATCTCCCCATGTATGCCGGATATGAGGAAGGACACCCAAATCATTAGCTTTGCAGTTGTAAGCTATATTCTCCTGGATCTCCCCATCATCGTAATCAGTGGTTGTGATGTCTACTTGAAATGCCTTCCGCAGGAAGATGGCCAAAGCTCCCGTCCCACTTCCCAATTCCAGGATCCGCCGTCCATGCAGAATCGATTTATTCTTTACCAGCCAATCAGCAAATAAGAACGTCCCAGGCCATAGCATGTTAGCATTCAGCTGATGACTTGAGAATTCCCTTATTTTCAGTTCCATGCCGGGGAACTTGTGGGCTCTTTCCTCGTACTGCACCGACTGCACCTGCTCATCGGCGTCCACCCTGGTCGTCGTCGGCGTCGCGGAAGAGGGAGGCGGCGGAGAAGAGGGCGGTCTCCATGGGCGTAGGCGTGGGCGTGGGCTTGTGCAGCTTTGGGTCTCGCTGCTCGTCTTGGC

Coding Potentia
Explanation CPC Score
noncoding -1.13949
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0242200.1 3 34728861 T G
Osa03LNT0242200.1 3 34729189 T A
Osa03LNT0242200.1 3 34729467 C T
Osa03LNT0242200.1 3 34730580 T C
Osa03LNT0242200.1 3 34731200 G C
Osa03LNT0242200.1 3 34731488 G T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0242200.1 osa-miR1863c Translation 4.0 11.656 1 24
Osa03LNT0242200.1 osa-miR812o-3p Cleavage 5.0 12.076 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0242200.1 3 qSBR-3 Resistance or Tolerance Sheath blight resistance G249 G164
Osa03LNT0242200.1 3 spp3.1 Morphological trait Panicle/flower RM130 RG1356
Osa03LNT0242200.1 3 yld3.2 Morphological trait Seed RM130 RG1356
Osa03LNT0242200.1 3 qPES-3 Morphological trait Panicle/flower G249 G164
Osa03LNT0242200.1 3 QFll3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0242200.1 3 QSn3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0242200.1 3 nan Resistance or Tolerance Drought tolerance R1618 G164
Osa03LNT0242200.1 3 Qbp1 Resistance or Tolerance Insect resistance R1925 R2443
Osa03LNT0242200.1 3 nan Morphological trait Panicle/flower G249 RG418
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus