© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0242600.1
CGTATCTTGCAGTCATACCAAAATAAATGCAATTTTACTGTAAAGGTACATAACATTACGGAGAGTTAATACTCACTCACTGGTGACAGCAGTAGCTACACTCTTTTAACAGGTGACAAAATTGCTCCGCAGAACATACTCATGTTACAAAAAAAACATCCAACACAGAAGCACGGATGTTCGTCTGTCGATTTCTCGTATTGCTGTAGATGCTTGGAAGTCAGGTGCAAAACTCATTTTTCGACTGCTTTATGGTCTGAGATTTTCAGAATGCCACGATCAACCAGCGGCTGCAGCTCAGCTTTTGCAAGATCCCTTACCTTGGAATCGGGCGATTCAAGGAATGCTGCGACCACCTTGGAACTGTGCCCATCAGCCCATGTCTTGCATTTGCCTTCAAGAGCTTTTTTCCATAGGATGGCAGCAAATGCTGGAGATTCAAGTATAAGTCTTCTGATTAGACGGCTGGAATGATAGTTATCAAAGGCATGTTCAGTATCTTCTGCCTTTGGACGTGCTGCATCAGAAGCTATTGCATTGTGCAAGCTGTGGATCCTGTCAGTGATGCCCTCCAGAATATTATCTTCTCCACCAACCGCAACCTCATGCAATACATCTTTGCCAAAATTTGTTCGAAGTAACTCCCCGACATTCTCAATGAGAGTCTGGATGAGCACCTCGGCAAGTTCACTTTTGATCAACAATTCATGTCGCCGTTGAAATGGGTCCTTTTTGCTGTCAGACGCACTCTGCATGCTTTCTGAACCATCTTGCTCCTTATTAGTTGCAACATCCACCTTATTCTCTGGGATATCTTCTGCAGCACTCTCGGAAGCTTCATCCTTTGAAATAAGAGAAGGCACACGATAGTTCAGACAAGCCAGATCAGCTGGAGGCAGATAGCGTGAACAATTAGGGTGAAGTAGTTGCAGCAATGGACGTCTTCCATTCTTGTCAAAAATAAGTTGCTTCAAATGTTTGGCGAGCTCTTGAATTACGATCTTGGTAACAAGCTTTGTGTCATCAACAACGGAAAGAATGGCAACAAGTAAAATGCATCCATAATCACTAAGAGCAAGCTTCATAATGTGCCCCTTCAAACTTTTAATGATCTTCTTCCTATCCTTTGCACTTCCATGCTTGAGGCAACTAACTCCTATTTTTAATCCTTCTCTGGTGTTCATAATCCGAACAAGAAGTGGCTCTGTCAACCTTTTTTTCTTAGCTTTCAGTTTCTTTTGTAATTCAGGGGCAACCGATGGCTCATCTCCATCAATGGCAGATGATCCTTGTGTAAGAAGGGGGATAAATTGTCGAATCACATCAGTGGCCGAGGTCTTGTCAGCGATTGTAAAATACTCCAATACAGCCGTGTGCACTATAGGATATTCAACGATACCTTTCTCCAAGATCGGATAAATCACGGTAGTCATATGCTGTGGGTTTTCTGTCCAGTCAGGTCAGTGAACAGCTGGAGCTCAGTAGAATACAATTCCAATAGCAACCTTCTTTTCTGAGGCGGTGTTGCCAGTTGATATGCAAAGTCAACGACTGAAGCTCCTATAGTATGACGAAGAAGTTTAGCAACACGACCGTGAAGAGAAGAGATGAACCATTCAAACTGCTTTTTAGTGGCTCGCTTAATGAGCTTCTTTACAAGGAAAACAGCATATTTCTTGAGAGAGAGAGTTAGCAAATCTGGCTGTAGGGCTTCAAAAATCGCATCCCTTTCTGATTGTGAGCACAACTTCACGCATGTTTGTAAAACACGTGCAGTTACGTGGGAACCAGCAATTTCTGAATATTTCCCATCCATTTTACGGAGAGCCTCACTTACCAGCTTAGATCTCTCCGTGCTGCTCACATTGTGGCATCGCATCTTTTCCCATAGTACAGTAAGCTCCTTCTCGAGGCTGTAATTCCGTTTCCTCTTCTTCTTCCTTGACTCTGCCATTTCCTTAGCAGCCAGGCGCTTCTCCTTGGCAGTAACCGGCTCCTTCTTCACCTTGACCTCGCCGCCGCCGCCGCCTTGCGCCATGTTGGCATCTGAGGGCCTCTTCCGCTTCTTCCCGTCGTCTCCCCCCTTCGCCAGCGTCTTGGGCTTCCCCGCCGCATCACGCTTCCGCTTCTTCGGGCTCTGGAGGTCGCCGCCGCCGGCCATGGCGATCTCGGAGACGGCGACGCGGTCTCGATCGGAGTAGGAAGACGAGGGTTTTTGCTCGGAGCC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0242600.1 | 3 | 34906792 | A | T |
| Osa03LNT0242600.1 | 3 | 34907137 | A | G |
| Osa03LNT0242600.1 | 3 | 34906700 | G | A |
| Osa03LNT0242600.1 | 3 | 34907033 | A | C |
| Osa03LNT0242600.1 | 3 | 34909261 | A | C |
| Osa03LNT0242600.1 | 3 | 34910576 | A | T |
| Osa03LNT0242600.1 | 3 | 34910612 | A | C |
| Osa03LNT0242600.1 | 3 | 34911358 | G | A |
| Osa03LNT0242600.1 | 3 | 34909423 | T | C |
| Osa03LNT0242600.1 | 3 | 34907581 | A | C |
| Osa03LNT0242600.1 | 3 | 34908107 | A | G |
| Osa03LNT0242600.1 | 3 | 34908634 | A | G |
| Osa03LNT0242600.1 | 3 | 34911894 | T | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0242600.1 | osa-miR5526 | Cleavage | 4.5 | 10.715 | 1 | 21 |
| Osa03LNT0242600.1 | osa-miR156l-5p | Translation | 5.0 | 21.541 | 1 | 21 |
| Osa03LNT0242600.1 | osa-miR435 | Translation | 4.5 | 18.021 | 1 | 20 |
| Osa03LNT0242600.1 | osa-miR1427 | Cleavage | 4.5 | 20.192 | 1 | 21 |
| Osa03LNT0242600.1 | osa-miR1857-5p | Cleavage | 3.0 | 13.098 | 1 | 21 |
| Osa03LNT0242600.1 | osa-miR395x | Cleavage | 5.0 | 17.481 | 1 | 21 |
| Osa03LNT0242600.1 | osa-miR1862f | Translation | 5.0 | 12.049 | 1 | 20 |
| Osa03LNT0242600.1 | osa-miR1862g | Translation | 5.0 | 12.049 | 1 | 20 |
| Osa03LNT0242600.1 | osa-miR5519 | Translation | 4.5 | 21.541 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0242600.1 | 3 | nan | Morphological trait | Panicle/flower | G249 | RG418 |
| Osa03LNT0242600.1 | 3 | qSBR-3 | Resistance or Tolerance | Sheath blight resistance | G249 | G164 |
| Osa03LNT0242600.1 | 3 | spp3.1 | Morphological trait | Panicle/flower | RM130 | RG1356 |
| Osa03LNT0242600.1 | 3 | yld3.2 | Morphological trait | Seed | RM130 | RG1356 |
| Osa03LNT0242600.1 | 3 | qPES-3 | Morphological trait | Panicle/flower | G249 | G164 |
| Osa03LNT0242600.1 | 3 | QFll3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Osa03LNT0242600.1 | 3 | QSn3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Osa03LNT0242600.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | R1618 | G164 |
| Osa03LNT0242600.1 | 3 | Qbp1 | Resistance or Tolerance | Insect resistance | R1925 | R2443 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)