© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0021900.1
CAACGAAATTCAGTTATAAACCTCAGCATTGCATGCATTTCGCACCTAACCTTCTAAAGGATCTTTTTCAGCCACTAAACACTTTACAGCCCTCCCCCTCCTATAACAAATACAACCTATACCCAGACTGACAAAGGGAAGGGGATAAGAAGATAACTAAAGGCAACAAAAGTTTTGCAGTACAAGAACCTTCATGACTACATTGTGAGCATCCAAACAATGAAGGCTATTATTGTCCATTTCCAACAAGCCAGATCAAGACAAGAAGATAATCCCCATAAAGAAATTGTCCTTCTCTGGAGGAAAGCATTTATAGTTGCCAACAAAATGCACCATTTCATATGTCCAAAACAGGAGGGGGGACTGTATTGTGATAAATCTCAGCGGAGAAACGAATGACTAATGAATCTCCCCATCTTCTCCAAGTTCACCATCTTCAAGGTCATCACGTGTGCCATTTCTGCGGGAGCTATCTCGATCCTTTTTGTGTCTTTTGTGCCGATTTTCACTATCAGAGTCCGAAGCATGGGTATGCTTCCTTGATTTCTTGCGATCACTGCTATGTCTACGAGACTTTTTAGAGTCATCCTTCTCATCCCTTTCAGAGCTCACATCATCTGCAGTGTCATGGTGGTGTCTCTTATGCTTCTTTTCCTTGTCCTTTTCTCTTTTCTTGTCTTTTGAGCCATGGCTATCTGCATCAACAGCATCAATATCCATCTCATCTTTCCTCGACCGATCCTTTCCTTTGTCCTTTTCTCTTTCTTTCTCCTTGTCTCTTTCTTTTTCTTTGCGTTCTTTCTCCTTCTTTTCTTTCTCTTTCCTCCGTTCTTTCTCTTCACGTTCCTTCTCTTTTCTTGCCTTTTCTTCCTCCCTCAAGCGCTCTTTCTCTTTTAACCTTTCTTTCAAGTGGACAACGCACTCTTCGAAAAGCTCTCTAGAGTATGTTTCGCTGTCCAATGCCTTGTACTCTTGGCTATCTTCGAATAGTGCTTTAGAATCATCCCATGTTGAAGAAGCTGATATTTCCTTGATTGAGTACAAAAGATCTGAGAAATTTTCACCCAGACGCTGGCGCTTCTTTGCTTCCTTTACCTCCTTTTCCCTGAGCCTTTCAACTTGATCATCAAAAATAAGCTTCATGTTTATGTTTGTTATTCCTTTCAAAGTATCATCCTCCGTAACAGCAGTTTCGAAATCCTCTAGTGTCCATGAAGTCGTCATAGGAATCTTTCCAGACTTCACTGCTTCTTTAATTCGGGCTTTGTCATCTTGATACTGTTTCTCAAGCTCCTCCATTACATCTTCAAACAGATCTTTTGGCATTGAACCACTTATGTTCGAGGCCACAGCCAAGTACACAGAGGAATCTTTAACCTGGGCACAGTAATCACGCCAACGAGTTTTTGCAGTAAGCATTCCTTCAGCTACATGTTCTTCCAACATCTTGCGAAATTCATCACGATTTTTGCGCTCTTGCCTCCTTACTTGTTCCTTATGTATCCGCTTGTGCTCTTCCTCTTCTTTCTCCAGATCCCTTATATACTCTTGGAAAATCTCCAGTCGATCGATCTTTTCAAGTCGGGAACAGCGTTCATCATCCTCAAGACGTTCTTGAACTTTTCTCCACTGGGTACTTGTCTTTATGAATTCACATGACTCGAGAAAAGCTCTATATTCTGCTATGTGCCTTTTGTGCTCTTCAGCAGCCCTGGCTCTTTCCTTCTTCTGTAGTTCCATAAGATAGCTCTCAAATAAGTCTTCACGCTCCCTTGGACGCTCAACAGCACTAAACCGTTCATCATCCTCAAACATAGTTATTGCTTTACTCCATCTTGTTGATGAAGTAAGCTCCTTAGATTCTTCTAGCATAGCTAAAAAATCATCACGTGCCTTCCGCTGTTTGATACGTCTTTCTTCTGCTTCAAGCTTTTTCCTCTGGTTTAGATACTCATTAAAAGCTTGCTTCCTCTCCCCAAGAGTTTTGAGGGCACCATACCTTTTGTCATTTATGATGACCCTCATAGCCTGATCCCATGTCCAATCAGACTCAACATTTGATGATTCAAGCAGAGCTTTGAACGCATTTTTAGCTTCCAACTTATTAGCATAGGTCACAGGTTCTTCTTCACTAGTTTTGTCTTCTACTGGAGTAACATTGATCTTCCCTGGAACTGCCATGGTCTTTTTGGCCTCCTCCAATTCTTCAGCAGATGCTCCATTTTGAGTGTCAGCAGTGCTAGCTAGAGATGGGTATTCGTTATTGGCTCTGCTAATCCCTGCATCACTTGCAACTGATGGAATTTCTGTGCTTATAACAGGAGTAACAACGGTACTTGGACCACCATTTTGCATGGCAGTATTAGATGAACTGGAGGTGTTCTCCATATTGTGCGAAGGGCCAGCACCAGGAGGAACAGAGTTCGCTGCTGCATCAAGTGTACTTGGAGCACCCATAATCGTTGTGGAGGACTGGTTAGCAGGTACAGAAGAAGGTTCCACAGAGTTTGAAGTGGGTCCAGAAGGAGCACCAGCAGTTGTTTCCGTTTCTTGATCAGGGCGTGGATTTGACGCCTTCTCTGCTAATTCACGCGCAATCTTTAACTCATCTGGAATCGTCCATTTGGATTGCTTTGTCACCTTATTGTAATAGTACTTTCGACCCTCTTGTGTAGTAAATTCTTTCCATTCAGTAGAGGCATCAGCTCTCTCCAACGGTGTCATCAACTCAGCAGGTTTCTCCCAACTTGATTGCCTTGTCTTCTTATTATAGTAGTACTTTTTCCCATCAGCTGAAGTGTGCTCTTGCCAGTCTGAAGAGCTAGTTTCGCTGGAATTGATTGAAGGCATTGTAGCGGAAGATGACATCGGCTGATGCCCAGGCTGCACAAGAGGTACATTCTGACCTGGAGCTGTACCCCAAGATTGCACTATGGGAGGAGGAACAGATGATGGTTGATACGTATAGGATGGAGGCGGTATAGGGCCTCCCATGGTGGGCATATGGCCTCCAGAGAATGTCGCTGGCGGCTGCAGAGGCCCAGATGACATAGGTCTAGCTGGCTGATAAGCCATAGGAACTGCTTGTGATGCAGGTGGAACTTGACCAGAGTGAGGCAAGTGCTGTGTAGGTTGCTGAAAATGTGGCATCTGACCTGGCATGCCAATATTAGCTCCTGGCATGGCCTGACCAACAGGTCGAAACTGCTGCCCCGGTTGCATGAACTGAGGAGGTTGTTGCTGATGAATCACCGGCCTAAACTGCATAGGCATCGGAGGTCCCAGATTTTGTGGTGGGACACTAGAGCCCATCATAGGGGGCCTAGATTGCTGCGGTGGCCCAGAAGGTTGCATATTACTTGCCATCAAAGCACATCAAAATGTGATGCGAAAAAGAGGAAACAAGTTTTTCCTAATACAGTGGCGCGGGGAAGGAAATCAATCCAGGTCCGGATCCGCGCCACTTCCAGTAGAACGGAGGACGACGACGACGCCGTCTCAACCACGGGAGAAGACCCACCCGAGAGAAGTAACCCCCCTTCGATTCGGGGTGGCAGGAGCGCCTCGGCGGAAGGAGACCTAGAGGGCGGAGCGGGTTCCGGCGGCGCGGGGCGAGGGCGGCAAGGAGCCCGGCCTCGGCGCCCCCCCTGCGAGATTACGGTTGCCGCGCGGCGGCGCGGGGCGAGAGACCAGTAGCGAGAAGAGAGAGAGAGAGGGAGAGATGCGGCGGCGTTGTCTCCACACGCCGGCGGCGAGGGCGGTGTGGGGTGGGGTTGGGGTTTTAGGGCAAAAAGGGGGTGCGGGCGCCGAGTCGGGCAAAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0021900.1 | 1 | 19181930 | A | G |
| Osa01LNT0021900.1 | 1 | 19182031 | A | G |
| Osa01LNT0021900.1 | 1 | 19182095 | A | G |
| Osa01LNT0021900.1 | 1 | 19182113 | G | T |
| Osa01LNT0021900.1 | 1 | 19182680 | G | A |
| Osa01LNT0021900.1 | 1 | 19184436 | C | T |
| Osa01LNT0021900.1 | 1 | 19184574 | G | A |
| Osa01LNT0021900.1 | 1 | 19184825 | T | A |
| Osa01LNT0021900.1 | 1 | 19184990 | C | A |
| Osa01LNT0021900.1 | 1 | 19185847 | G | C |
| Osa01LNT0021900.1 | 1 | 19185929 | A | G |
| Osa01LNT0021900.1 | 1 | 19186395 | C | T |
| Osa01LNT0021900.1 | 1 | 19186794 | C | G |
| Osa01LNT0021900.1 | 1 | 19188005 | A | G |
| Osa01LNT0021900.1 | 1 | 19188412 | G | A |
| Osa01LNT0021900.1 | 1 | 19191113 | T | G |
| Osa01LNT0021900.1 | 1 | 19191528 | G | A |
| Osa01LNT0021900.1 | 1 | 19191644 | T | C |
| Osa01LNT0021900.1 | 1 | 19190893 | T | C |
| Osa01LNT0021900.1 | 1 | 19192279 | C | T |
| Osa01LNT0021900.1 | 1 | 19189109 | C | T |
| Osa01LNT0021900.1 | 1 | 19187429 | A | G |
| Osa01LNT0021900.1 | 1 | 19191868 | A | G |
| Osa01LNT0021900.1 | 1 | 19178982 | A | G |
| Osa01LNT0021900.1 | 1 | 19179617 | G | T |
| Osa01LNT0021900.1 | 1 | 19179779 | C | T |
| Osa01LNT0021900.1 | 1 | 19179864 | T | C |
| Osa01LNT0021900.1 | 1 | 19179966 | C | T |
| Osa01LNT0021900.1 | 1 | 19180111 | A | G |
| Osa01LNT0021900.1 | 1 | 19181143 | A | G |
| Osa01LNT0021900.1 | 1 | 19180899 | C | T |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa01LNT0021900.1 | DTM_#DNAt_MULE_japo_Os0086 | Chr1 | - | 19187048 | 19187445 | 397 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0021900.1 | osa-miR5815 | Cleavage | 4.5 | 16.387 | 1 | 24 |
| Osa01LNT0021900.1 | osa-miR5837.1 | Translation | 2.5 | 14.79 | 1 | 21 |
| Osa01LNT0021900.1 | osa-miR156a | Cleavage | 5.0 | 6.278 | 1 | 20 |
| Osa01LNT0021900.1 | osa-miR156b-5p | Cleavage | 5.0 | 6.278 | 1 | 20 |
| Osa01LNT0021900.1 | osa-miR156c-5p | Cleavage | 5.0 | 6.278 | 1 | 20 |
| Osa01LNT0021900.1 | osa-miR156d | Cleavage | 5.0 | 6.278 | 1 | 20 |
| Osa01LNT0021900.1 | osa-miR156e | Cleavage | 5.0 | 6.278 | 1 | 20 |
| Osa01LNT0021900.1 | osa-miR156f-5p | Cleavage | 5.0 | 6.278 | 1 | 20 |
| Osa01LNT0021900.1 | osa-miR156g-5p | Cleavage | 5.0 | 6.278 | 1 | 20 |
| Osa01LNT0021900.1 | osa-miR156h-5p | Cleavage | 5.0 | 6.278 | 1 | 20 |
| Osa01LNT0021900.1 | osa-miR156i | Cleavage | 5.0 | 6.278 | 1 | 20 |
| Osa01LNT0021900.1 | osa-miR156j-5p | Cleavage | 5.0 | 6.278 | 1 | 20 |
| Osa01LNT0021900.1 | osa-miR156k | Cleavage | 4.0 | 6.278 | 1 | 21 |
| Osa01LNT0021900.1 | osa-miR156l-5p | Cleavage | 5.0 | 6.278 | 1 | 21 |
| Osa01LNT0021900.1 | osa-miR171c-5p | Cleavage | 3.5 | 13.094 | 1 | 21 |
| Osa01LNT0021900.1 | osa-miR171g | Translation | 4.5 | 17.562 | 1 | 21 |
| Osa01LNT0021900.1 | osa-miR417 | Translation | 5.0 | 12.511 | 1 | 21 |
| Osa01LNT0021900.1 | osa-miR529b | Cleavage | 3.5 | 7.971 | 1 | 21 |
| Osa01LNT0021900.1 | osa-miR1858a | Cleavage | 4.5 | 2.627 | 1 | 21 |
| Osa01LNT0021900.1 | osa-miR1858b | Cleavage | 4.5 | 2.627 | 1 | 21 |
| Osa01LNT0021900.1 | osa-miR2097-5p | Cleavage | 4.5 | 2.696 | 1 | 22 |
| Osa01LNT0021900.1 | osa-miR2097-3p | Cleavage | 3.0 | 15.147 | 1 | 22 |
| Osa01LNT0021900.1 | osa-miR2919 | Cleavage | 3.5 | 2.217 | 1 | 19 |
| Osa01LNT0021900.1 | osa-miR2919 | Cleavage | 4.0 | 1.91 | 1 | 19 |
| Osa01LNT0021900.1 | osa-miR2919 | Translation | 4.5 | 4.374 | 1 | 19 |
| Osa01LNT0021900.1 | osa-miR5161 | Cleavage | 4.5 | 10.246 | 1 | 20 |
| Osa01LNT0021900.1 | osa-miR5488 | Translation | 3.5 | 14.618 | 1 | 21 |
| Osa01LNT0021900.1 | osa-miR2275c | Cleavage | 3.0 | 19.493 | 1 | 23 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0021900.1 | 1 | nan | Morphological trait | Root | RM23 | RM306 |
| Osa01LNT0021900.1 | 1 | qNVB-1-1 | Morphological trait | Culm/leaf | R2159 | C178 |
| Osa01LNT0021900.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0021900.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0021900.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0021900.1 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0021900.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0021900.1 | 1 | rfw1b | Resistance or Tolerance | Drought tolerance | C813 | C955 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)