>Osa03LNT0243200.1

ATAATACTCCATCCATCCCAAAAAACACTCCTTTCCTTGGTTGAGTTTTTTTTTTTGGACGGAGGGAGTAAATAGATCACAAACAGAGTACTAACTGATAATAATCTATACACGAGCATCTCTGAATATTCTCACCAGCTTCACACATAGGACTGTTGTTTTCCATCAACCACTAGCTTCAGACATTCGCCATATAGGACTTTTTTTTTCCAGAACCACTACGATCTGTGAATCTTGGTGCTCTTGGAGAAGCATTCGCCGGCGGCTGCTCCCAGTCCCAGCTTCACTGCCTGGAGCGTCCGCCCCCAGATACTGAGGATGTGATGGCAAGGGTTGTTCTTCGCAGTACTCGTCGTGCGCACGAGACTTGCACAGGAATGGAACGAATCGGCCTCCGAGGTTGGCGCCGCCGCAGGTCTCGGCCGCACGCGGACGGGGATCGTGAAGGCGGCGCCGGAATTCGTCAGAGCGGCCTCCGAAGTGGGCGCTGCCGACGCAAATCGGGCGCACGCGGAAGGCACTGCGCGCGCATCCAACGCCAGCGGCCGGAGTCGCGCTCTCCACAGCAGTCGCTCCTGCACGTACGCACACACGGCGGAGAAGTGGGTTGACGCCGATTAATGGAGGAGGCGAAGAGGAACGGAAGGAGAGGGGGCGCCGGAGAGTTTCGCCGTCGGCGGAAGGGAACGCGATATACTCCTACAAGCGCAACCGTTGGCCGGAGTCGCG

Explanation	CPC Score
noncoding	-1.10581

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0243200.1	3	35294353	T	C
Osa03LNT0243200.1	3	35295015	C	G
Osa03LNT0243200.1	3	35295062	C	T
Osa03LNT0243200.1	3	35295166	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0243200.1	osa-miR172d-5p	Cleavage	5.0	17.842	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0243200.1	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0243200.1	3	QSn3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0243200.1	3	Qbp1	Resistance or Tolerance	Insect resistance	R1925	R2443
Osa03LNT0243200.1	3	spp3.1	Morphological trait	Panicle/flower	RM130	RG1356
Osa03LNT0243200.1	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0243200.1	3	yld3.2	Morphological trait	Seed	RM130	RG1356

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus