>Osa03LNT0243700.2

GCAGCTGCATTAACAATGCGGGAAAAAACAAACTTCATGTAGCCCTGCGTGTGTTATCAAGTTCATCGTTCATCAGAACTATGGAGTGTACAGGATCATGCAGGTTTTTTCTTTAAGAAAAACTTCTGTACATAACCGTGGTTCTCATGTACTAGTTGTAAACGACAATCGGGTCACAGAAAATAACTCAAAATTATCCAATGTAAAATTCCTGCTTATCCATATGTTTCTTGTAGTATCTACTGTATGTTGTAATGTAGTCATATACTGTTATCCACAGATCTGCCTGCCTACCTCTGCATGTGGGGAGGATGAACTTAGCTTTTAATCTTCATAGATTAATATTGATCTCTGTCAAAAGCTCCACACAGTAGTATTCTGCACGTCTGCATGTCAAATTCCAACAGCATCAAGAAGCTCTGAATGTTGTGACACGGAGACTAGCGTGTTTGCGACAATTGCACCACTTGCAGCGACGGCCGGTACACCGATGCCTGGAAAAGTCGAGTCACCACAGCAGAATAGCTGGGGTATAGGTGTTGCCTGCCCAGGGAAAGTGGCCTCCCCAGCTTTTATGGCTGGACCATAGGTTCCTCTATTTCTTCGGAGGAACCTCTTGTGTGTTAATGGTGATCCAACCAGCTTCACATCGCATTTTTCTCTGCTAAATCTTGGACCAAGGGCAAGCTCCACGGCTTTCCACATCACCTCAGAGCGTTCTTCTTTCAGCCTTCGATACTCGGCGCTTTTCCTATCTAGTCCTTCCCACAAACTGAAAGGTTCTGTTCCTGGTGTATAAGCATGTAGGACGTGCTTTCCAGGCGGTGCTAAGCCATTTCCAAGAACAGTAGGAACTGATATCAATACAACGTTCTGGTCAGCATCAACTCCTTTGTTCCAATCATTAACCACAATATGATGGATTCCAAGGTCCTCTCTGGCATTCTCGACATCAAAACCCAAGTGGAGATGCATAAATGATTCACATTGTGGAGTTGCTTTCACTTTGTCTTGATATGATCTTGGGACAGCATCTGGTGGCAGCAAATCCAAAGTATCCCACATAGATGCATTGCTAACAACTGCTTTCCTTGCGCGCACAATTTGTCCACTTTGTAGCTTGACACCAACTGCTCGACCATTCTCAATTAAAATCTTTTCAACATGCGAACGAAGAGCAAGCCTGCCACCAAATTTTTTTATTCCTCGCACAAGAGCATCTATTATTGCTCCGCTTCCCTCAAGAGGATACTCAAGCGAGCATCCTGGTTTATACCATTCATTTCTGCAGAAAGAGCACCATCAGATTTGACTCCAGCAAGTAGAAAACACAAGAGATCGATCCAATTACGAACAAAGGGGTTTTTCAGGCCCAATGAATCAACGATCTCTGAGAAAGGTCTTAGAAGTTTTGTAGCACCAAGAGCCCCTTGAGGTCCCATTTGCAGGATTGATTTCAACAGAGAAGGAGCATATCTACCAGCAGATGTGGAGAGAACACCTAAATCACCTCGAATGGAAAGTGGAGGCAAAGCCATTGCAGCTGCAGAGATAGGAATAACTGCATCAAGAAGCTTTTTCCACTCCTGGACTGCATCAGCACCAACAAATTCATCAAGGTCCTTGAGGAAATCAGTTGGACCTATCCGCGAAAGGAACTGGCCTTCAGGTACATAAACCATCCAGGAATCATATGAGGCACATGGAACTGATTCGCCTAGCGCATCAAGGACCTGGGCGAGGGGATTGGCCTGGGGGCCTCTGGACTGGAAGCCGGAGAACAGGGAAGGGCCCGAGTCGAAGTTGAAGCCCTTGATGTCAAACGAGTGCGCGGCGCCTCCGGGGCGGTCATGGCTCTCGAGCACGAGCACGTCCTGGTTATACCTCGCCAGGAGCCCCGCGCAGCACAGCCCGCCGATCCCGCTCCCGATGACGACGACGTCCGCCTCCGGCCTCTCCGCCTCCCCGGAGAGCGCGCCGTCCTCGCCCTCGGGGATGGAGGGGTCCGCGGGGCGCTCGTCGGCGGCCACCGCCCTGCAGCGCGCGGGACGAGCGGCGGCCGCGCATCCGCGTCGTGGCCGTGGGG

Explanation	CPC Score
noncoding (weak)	-0.980076

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0243700.2	3	35393089	A	G
Osa03LNT0243700.2	3	35393757	A	G
Osa03LNT0243700.2	3	35394171	T	G
Osa03LNT0243700.2	3	35394566	A	G
Osa03LNT0243700.2	3	35395539	T	C
Osa03LNT0243700.2	3	35395556	A	G
Osa03LNT0243700.2	3	35395641	T	C
Osa03LNT0243700.2	3	35395851	G	A
Osa03LNT0243700.2	3	35395944	G	A
Osa03LNT0243700.2	3	35396043	A	G
Osa03LNT0243700.2	3	35396169	G	A
Osa03LNT0243700.2	3	35396205	A	G
Osa03LNT0243700.2	3	35397023	C	A
Osa03LNT0243700.2	3	35397543	G	T
Osa03LNT0243700.2	3	35397883	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0243700.2	osa-miR5837.1	Translation	4.0	17.85	1	21
Osa03LNT0243700.2	osa-miR1853-3p	Cleavage	4.0	8.815	1	22
Osa03LNT0243700.2	osa-miR2105	Cleavage	4.5	16.743	1	20
Osa03LNT0243700.2	osa-miR5511	Cleavage	4.5	23.216	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0243700.2	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0243700.2	3	spp3.1	Morphological trait	Panicle/flower	RM130	RG1356
Osa03LNT0243700.2	3	yld3.2	Morphological trait	Seed	RM130	RG1356
Osa03LNT0243700.2	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0243700.2	3	QSn3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0243700.2	3	Qbp1	Resistance or Tolerance	Insect resistance	R1925	R2443

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus