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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0243900.1

CTTCCCTTTTGGAATAACTATTATCTTTCACGCTCCTCCCAAGCTTTCGATTCTGAACCAGAATTCCACGGTGAATCGATCTTCCGACGCCAGATCGACGCGAGTTGAGAGACGGCCGTGCTCAGGACGGCGGAGCGCCGGCGAGATGCGGAGGCGGCGGCGCCGCCACCACGCGCGCTCCTAGGTTACTTTCCTCTTTTTTTTTTCTCTCTTTTTGATGCTTGTCTTCAGATGTTCAGAGTTCAGAGGAGTTAGCCAGGTAGGGCTCTTGTGCTACGTCTGTGAGAGCTTGTGTTTAGAACTTTAGATCAACCATTTTATGTTTTTTTTTGGGTGAAACAATTGTTGTAGCAGGGAGACAACGCCCTCTCTCCTATCCGGTCGAAACATCTAAGATGGTTTATGGAAAGTTCCTAAGTGTAAAACAAGGAAAACACTCTCGAGTTGGAAAACACTCTCGAGTGGAAAAACACTATCGAGTTGGAAAACATTCTCGGGTGGTTTCTTATCACTTATATGTAACTCATCTTGTTTGGAGATGATTTCTGAATACATGGCAGGTGAATCTGGCGATCGGGAAGTTGTTGAAGGATGTGCAAACCCTCAATCATAGAAGACATTCGGCTAAGAGAGCTCGAAGGAAAAAACCTGCTCGAGTAAAGATCCGGTCGAATGGAAGATTCTGTGGGGGCCGTTTCTCAACCACTCTTGCCAGCTGGAGCCAAAAGACTAGAATGACCCTGAGAATGTACTAAAATACCCCTAGGGTTGCTGACATGGCAAGGGCATTATAGGAAGATCACTAAAGCCCATGAGGGTAGAAATGTAACATCACATGTAAGACCGTAGGCTATAAAAGCCGGTCAAGTCCCT

Coding Potentia
Explanation CPC Score
noncoding -1.25532
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0243900.1 3 35431756 T C
Osa03LNT0243900.1 3 35431784 C T
Osa03LNT0243900.1 3 35431888 G A
Osa03LNT0243900.1 3 35431692 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0243900.1 osa-miR5528 Cleavage 5.0 22.948 1 21
Osa03LNT0243900.1 osa-miR166b-5p Translation 3.5 20.417 1 21
Osa03LNT0243900.1 osa-miR166b-5p Translation 5.0 18.874 1 21
Osa03LNT0243900.1 osa-miR166c-5p Translation 4.5 20.417 1 20
Osa03LNT0243900.1 osa-miR166d-5p Translation 3.0 20.417 1 21
Osa03LNT0243900.1 osa-miR166d-5p Translation 4.5 18.874 1 21
Osa03LNT0243900.1 osa-miR166h-5p Translation 4.0 20.417 1 21
Osa03LNT0243900.1 osa-miR5486 Cleavage 5.0 17.48 1 21
Osa03LNT0243900.1 osa-miR5497 Translation 5.0 16.781 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0243900.1 3 Qbp1 Resistance or Tolerance Insect resistance R1925 R2443
Osa03LNT0243900.1 3 nan Morphological trait Panicle/flower G249 RG418
Osa03LNT0243900.1 3 spp3.1 Morphological trait Panicle/flower RM130 RG1356
Osa03LNT0243900.1 3 yld3.2 Morphological trait Seed RM130 RG1356
Osa03LNT0243900.1 3 QFll3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0243900.1 3 QSn3 Morphological trait Culm/leaf G249 RG418
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus