>Osa03LNT0244400.2

AGTAAATTCGGTTCTACGAAATTCAGTCACAGTAACACAGTGCATCGTCCACAAATTGTCCCTCCCGATGCATATATTGTGGTGAGATCACATCGATATGGAGGAGAAATAATGCTTATACATACTGAATCAGCAACCTTATTCCATTTCACTCCAAAAAAATTTTAAAATGGTTGCATTATTGTATGTTCTAGCTACTGTCTACTCAAGAGATGTCTTCCAAGGCAAAGAAAATGCAAACTACTGTCTGTATGTACTCATGCTCACTCCACATCACTTGTACAACGCATCAATCTCTCTATGATATTTGGCAGTCACTTTGTCCCTCCGTAATTTCAAAGTGGGTGTTAGCAAACCATTATCCACCGTAAATGGTTCATCGACAATTAGAATCGGGCCAATTTGGAAGGAACAATCCACCATCCAAGTTCTCAGCTCATCATATAGCAAGTTCAAAACCTTATCTTTGGCTAGTTCGTTATTCCCATCAAGAATGGACTTCCTTTTAGCTGTTGCTAGAACTTCATCATAGTTGGGAACGATAAGAGCACCAATTCGCCGCTTGTCCTGGCCAACAACAACTATCTGATTAATCAAGTCACTCCTGCTGGCTGCTTCCTCAATCTCAGCAGGTTCAACATTTTCACCTGTTGTGAGAACTATTGTATCTTTTGCACGCCCTTCAAGAACAAGCATCCCTCCACACTTCCGACTTGGCCCTGTTGGACAGTGAGGTGCAATCCAACCAATATCCCCTGTGTCAAACCAACCTTCTTGATCCAAAACTTTATTTGTAGCTGACGGATTCTTGTAATATCCCTTCATCACTTGGGGTCCTCTGACTTTCACAACCCCCTTTGAACCATCTGGAAGAACCTCACCAGTCTCCATATCCACAACCTTGATTTCCGTGTGCTTTACTGGGTGGCCAACTGTGCCAAGAACGTTACAGAATGGCCGTCTAGCAGCTACAACAGGGGATGTCTCTGTTAGACCATAGCCATTTTGCACTTTGACACCGATGGCCTCAAAAAATTTGTCAACATGCATCGGGAGACTTCCACCACCACTAATGCCAGCCTTTGAAATCCCAATTGCAGAATGGATTTTCTTGTAGACTAACGTCTTTGCCAGATTATGCAAAGGCCACAGAAGTGCAGCAACAATTCTTGCAGATAGCCAATTGACCATATACACAATAAAGGATGGTTTGACGGGATTGTTCGATAGGACTGTTCCCTCGTATATCCTCTTTGCCTCCATATATAGCAAACTTATCTTAATAAGTGCAAGAGCAACAAATTTCCGAGCAGTTGAACTGGAAGATATCTGTCTCTGAATTGAGCTTTACAAAGTGAAGAAGAAACATCAGAAAATAGATTGAAAAAGCAATCATTAAGCATTACAATTTCGCAAGAAAATGCCTGCATCAAGGACAAAGAAGAACATTGCCTACACTGACTGGGTGCTTCCTATAAAATTAGTTAGAGCTTACAGCCATTCAACACAAACATTTGGCAATAGAACTTAGATTATACAGGGAGTGCTTGGTATGGAGCCACATTGAGGGTATCAGTGAGCTGAAATAATGTTACATCTCTAATGCAAATTCATGTAGAATACTATATGGAAGCAGTTCAGCATTGTAATAAAAGAACTAACCTGTAGAGAATCTCATAGACCAGTGGAACTGATACTATGTATTGAGGTTGGTATCGTTGCAAATCTTCCTATCAATAAATAGAAGATAAGTCGAATTTTTTTTTGACGCAAAAAGAGATAAGTCGAAATTGACTAAGCAACTTTGGCATCTTCGGAACTAATGGAAAATAAAACTAGTGACCAGAAAGGAGAATACGGCAAGCGAAAGTAATCCTATCATATCCATTATGATACTTGGGTTTGCCTAAAGATTACTACTTAGATGGTCTGGAGTCCTGCAGATTGTTACATGCTTATACTATATCAAACTCAAAGTTGTTATCCGTCAGTAAGCTGCTAAAGAAAACTACAGCATTTATGAATGTAATTATGGTCACAATAGCTCCTTAGTGACATCATAAGGCCCTTTATGCAACTAACTATAATAAGCTTATTTATGATTATGCATACCAAAATGTTACCTTCAGGTACTTGACAGTCGTGTAAACTTGTTGAATTCCATAAGTGAAGATGAAGTACTCGCTAGCACGCTCATATGCATGCCATGGTGGAAGCATGCTTAGGAACCTATCACCAGGTACTGCTGGTACAAAATCCCACAAATTTTTAATCTGATGCAAGAGGTTTCGGTGGGTAAGCATCACTCCTTTTGGTGTTCCACTCGTTCCACTGGTATATATTAGTGTAGCAACATCATCTGGAGTAATAGTTTCAAAGACGACCTGCTGACCTTGTTCATGAGAGTGACGCAATGTATTACGGCTTTCTCGTCCGAGTTGAGTGATATCCTTGAAGTCATAAAGTGGTATTCCATTCACAACTTCACTGTTTAGGCACGATTTCTCACCCCAAAGTAGCACAATAAATCTTGCGTTAATCCTCGAAATAAAAGATTCTTTCTGAATGAGTGTAAATTTGAAATAATTCTTCATCAGAAGATCTTGTTCCTCTAACAACATTTATAGCACCAGTAGCCATGATTCCTTGATCTGCAACTAGCCATCGGCATGAGTTATCAGCAAAAAGGGCTATCTTTTCATCTGGAGCAACTCCAATGGCCCTTAGACCTTGAGAAAAATCCAATATTTCTTGTTCAAGCTGCTTATAAGTCAATTCTGAAGGAGGTTCATGGTAAGGATCTACCAAAGCTACACGGTCAGCATATTTTTCTGCTGCTGTCCTCCAAATGTCTGGAACAGCCATCCAATCATGCGTAGTCAAACCATTTCCACCAGGTAATAGAGCACTCTCAAGTAATGGTGAGCACTTTCTGCGAACTGGGTTTTCTAGCGTGGAACCCGCGGAGGGGGACGCCGCGGCGGCGTCGCACCGGAGGACCCCACCTCGGCGGTGGTGGTGGCGGCCCCGGCGGCGGGCGGGGAGGAGGAGCAGCAGCGCGGCGGCGGAAGGCGGTGGGTGGAGGAGGCGGAGGCGGCGGCGACGCAGGAGGAGGAGGGAGGCGGTGGGGAGCGTCGGCGAGGGGGAGCAGAGCGCCGCCATTTGGCCGGAGGCGGAGGAGGCGAGCATCGCCGGGCGCGGCGAGGTGGCGGCGATCGGGGGGGTCTCCACTGACGTGGTGGGGTTGGGGTGGAGGGGAGCAGCAGTGATGTGTAGCACACTAGCGGAAGGGGGATTGGTGGAGCGGCGGAGATGACGACGACGACGCCGAGATGGGTGGAGAGGTGAGGTGAGGTGGGTTGTCTGG

Explanation	CPC Score
noncoding	-1.07111

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0244400.2	3	35551740	A	C
Osa03LNT0244400.2	3	35549562	T	A
Osa03LNT0244400.2	3	35549563	A	T
Osa03LNT0244400.2	3	35549564	A	T
Osa03LNT0244400.2	3	35550350	G	A
Osa03LNT0244400.2	3	35550483	G	C
Osa03LNT0244400.2	3	35551264	A	G
Osa03LNT0244400.2	3	35551335	A	G
Osa03LNT0244400.2	3	35551631	A	G
Osa03LNT0244400.2	3	35553439	G	A
Osa03LNT0244400.2	3	35553695	A	G
Osa03LNT0244400.2	3	35554172	A	G
Osa03LNT0244400.2	3	35554752	C	T
Osa03LNT0244400.2	3	35554926	A	T
Osa03LNT0244400.2	3	35555597	T	C
Osa03LNT0244400.2	3	35556093	C	T
Osa03LNT0244400.2	3	35553396	A	G
Osa03LNT0244400.2	3	35556301	G	A
Osa03LNT0244400.2	3	35556580	C	T
Osa03LNT0244400.2	3	35557941	C	T
Osa03LNT0244400.2	3	35556113	T	A
Osa03LNT0244400.2	3	35551526	A	T
Osa03LNT0244400.2	3	35552749	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0244400.2	osa-miR5812	Cleavage	4.0	16.416	1	24
Osa03LNT0244400.2	osa-miR6256	Translation	3.5	18.618	1	22
Osa03LNT0244400.2	osa-miR531c	Translation	4.5	17.142	1	24
Osa03LNT0244400.2	osa-miR531a	Translation	4.5	17.142	1	24
Osa03LNT0244400.2	osa-miR1431	Cleavage	4.0	20.651	1	21
Osa03LNT0244400.2	osa-miR1866-5p	Cleavage	3.5	14.213	1	24
Osa03LNT0244400.2	osa-miR2929	Translation	3.5	15.799	1	21
Osa03LNT0244400.2	osa-miR2122	Translation	5.0	11.713	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0244400.2	3	Qbp1	Resistance or Tolerance	Insect resistance	R1925	R2443
Osa03LNT0244400.2	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0244400.2	3	spp3.1	Morphological trait	Panicle/flower	RM130	RG1356
Osa03LNT0244400.2	3	yld3.2	Morphological trait	Seed	RM130	RG1356
Osa03LNT0244400.2	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0244400.2	3	QSn3	Morphological trait	Culm/leaf	G249	RG418

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus