© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0244400.3
AGTAAATTCGGTTCTACGAAATTCAGTCACAGTAACACAGTGCATCGTCCACAAATTGTCCCTCCCGATGCATATATTGTGGTGAGATCACATCGATATGGAGGAGAAATAATGCTTATACATACTGAATCAGCAACCTTATTCCATTTCACTCCAAAAAAATTTTAAAATGGTTGCATTATTGTATGTTCTAGCTACTGTCTACTCAAGAGATGTCTTCCAAGGCAAAGAAAATGCAAACTACTGTCTGTATGTACTCATGCTCACTCCACATCACTTGTACAACGCATCAATCTCTCTATGATATTTGGCAGTCACTTTGTCCCTCCGTAATTTCAAAGTGGGTGTTAGCAAACCATTATCCACCGTAAATGGTTCATCGACAATTAGAATCGGGCCAATTTGGAAGGAACAATCCACCATCCAAGTTCTCAGCTCATCATATAGCAAGTTCAAAACCTTATCTTTGGCTAGTTCGTTATTCCCATCAAGAATGGACTTCCTTTTAGCTGTTGCTAGAACTTCATCATAGTTGGGAACGATAAGAGCACCAATTCGCCGCTTGTCCTGGCCAACAACAACTATCTGATTAATCAAGTCACTCCTGCTGGCTGCTTCCTCAATCTCAGCAGGTTCAACATTTTCACCTGTTGTGAGAACTATTGTATCTTTTGCACGCCCTTCAAGAACAAGCATCCCTCCACACTTCCGACTTGGCCCTGTTGGACAGTGAGGTGCAATCCAACCAATATCCCCTGTGTCAAACCAACCTTCTTGATCCAAAACTTTATTTGTAGCTGACGGATTCTTGTAATATCCCTTCATCACTTGGGGTCCTCTGACTTTCACAACCCCCTTTGAACCATCTGGAAGAACCTCACCAGTCTCCATATCCACAACCTTGATTTCCGTGTGCTTTACTGGGTGGCCAACTGTGCCAAGAACGTTACAGAATGGCCGTCTAGCAGCTACAACAGGGGATGTCTCTGTTAGACCATAGCCATTTTGCACTTTGACACCGATGGCCTCAAAAAATTTGTCAACATGCATCGGGAGACTTCCACCACCACTAATGCCAGCCTTTGAAATCCCAATTGCAGAATGGATTTTCTTGTAGACTAACGTCTTTGCCAGATTATGCAAAGGCCACAGAAGTGCAGCAACAATTCTTGCAGATAGCCAATTGACCATATACACAATAAAGGATGGTTTGACGGGATTGTTCGATAGGACTGTTCCCTTTCCAATGGAAGAGGAGAAAAATAAGAAGAAATTTGGATATTAGTGGTAAAGAATCATGCTACACCTACAAATAGAATTCATGGGATAGGAATTTCTAGATCAAAAGGTCATCATATATGAGACAAAGGGAAGATAACATCTTTGACTATTATAATTGCAGCAAAGAAAATGAAGTAGCTTGTGTCAGCTCAGGGTCCAGACCTCGTATATCCTCTTTGCCTCCATATATAGCAAACTTATCTTAATAAGTGCAAGAGCAACAAATTTCCGAGCAGTTGAACTGGAAGATATCTGTCTCTGAATTGAGCTTTACAAAGTGAAGAAGAAACATCAGAAAATAGATTGAAAAAGCAATCATTAAGCATTACAATTTCGCAAGAAAATGCCTGCATCAAGGACAAAGAAGAACATTGCCTACACTGACTGGGTGCTTCCTATAAAATTAGTTAGAGCTTACAGCCATTCAACACAAACATTTGGCAATAGAACTTAGATTATACAGGGAGTGCTTGGTATGGAGCCACATTGAGGGTATCAGTGAGCTGAAATAATGTTACATCTCTAATGCAAATTCATGTAGAATACTATATGGAAGCAGTTCAGCATTGTAATAAAAGAACTAACCTGTAGAGAATCTCATAGACCAGTGGAACTGATACTATGTATTGAGGTTGGTATCGTTGCAAATCTTCCTTCAGGTACTTGACAGTCGTGTAAACTTGTTGAATTCCATAAGTGAAGATGAAGTACTCGCTAGCACGCTCATATGCATGCCATGGTGGAAGCATGCTTAGGAACCTATCACCAGGTACTGCTGGTACAAAATCCCACAAATTTTTAATCTGATGCAAGAGGTTTCGGTGGGTAAGCATCACTCCTTTTGGTGTTCCACTCGTTCCACTGGTATATATTAGTGTAGCAACATCATCTGGAGTAATAGTTTCAAAGACGACCTGCTGACCTTGTTCATGAGAGTGACGCAATGTATTACGGCTTTCTCGTCCGAGTTGAGTGATATCCTTGAAGTCATAAAGTGGTATTCCATTCACAACTTCACTGTTTAGGCACGATTTCTCACCCCAAAGTAGCACAATAAATCTTGCGTTAATCCTCGAAATAAAAGATTCTTTCTGAATGAGTGTAAATTTGAAATAATTCTTCATCAGAAGATCTTGTTCCTCTAACAACATTTATAGCACCAGTAGCCATGATTCCTTGATCTGCAACTAGCCATCGGCATGAGTTATCAGCAAAAAGGGCTATCTTTTCATCTGGAGCAACTCCAATGGCCCTTAGACCTTGAGAAAAATCCAATATTTCTTGTTCAAGCTGCTTATAAGTCAATTCTGAAGGAGGTTCATGGTAAGGATCTACCAAAGCTACACGGTCAGCATATTTTTCTGCTGCTGTCCTCCAAATGTCTGGAACAGCCATCCAATCATGCGTAGTCAAACCATTTCCACCAGGTAATAGAGCACTCTCAAGTAATGGTGAGCACTTTCTGCGAACTGGGTTTTCTAGCTGCGATGCAGACATATGAAAGTTTTGGTGAAAACGTTGTAAGCGTCATATGAAAATTATTGTCTGTTGCACAATACTGAAGACACAATTTCACACGTATACTCATAATGTCAAAATCCAAAGCAATTCCAAGTAAAACAACCAGCAAAAAAAACGGCTCCTGCAAAAGCTAAACACAATCTACTGCTTGCTT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0244400.3 | 3 | 35551740 | A | C |
| Osa03LNT0244400.3 | 3 | 35549562 | T | A |
| Osa03LNT0244400.3 | 3 | 35549563 | A | T |
| Osa03LNT0244400.3 | 3 | 35549564 | A | T |
| Osa03LNT0244400.3 | 3 | 35550350 | G | A |
| Osa03LNT0244400.3 | 3 | 35550483 | G | C |
| Osa03LNT0244400.3 | 3 | 35551264 | A | G |
| Osa03LNT0244400.3 | 3 | 35551335 | A | G |
| Osa03LNT0244400.3 | 3 | 35551526 | A | T |
| Osa03LNT0244400.3 | 3 | 35551631 | A | G |
| Osa03LNT0244400.3 | 3 | 35552749 | A | G |
| Osa03LNT0244400.3 | 3 | 35553396 | A | G |
| Osa03LNT0244400.3 | 3 | 35553439 | G | A |
| Osa03LNT0244400.3 | 3 | 35553695 | A | G |
| Osa03LNT0244400.3 | 3 | 35554172 | A | G |
| Osa03LNT0244400.3 | 3 | 35554752 | C | T |
| Osa03LNT0244400.3 | 3 | 35554926 | A | T |
| Osa03LNT0244400.3 | 3 | 35555597 | T | C |
| Osa03LNT0244400.3 | 3 | 35556093 | C | T |
| Osa03LNT0244400.3 | 3 | 35556113 | T | A |
| Osa03LNT0244400.3 | 3 | 35556301 | G | A |
| Osa03LNT0244400.3 | 3 | 35556580 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0244400.3 | osa-miR5812 | Cleavage | 4.0 | 16.416 | 1 | 24 |
| Osa03LNT0244400.3 | osa-miR6256 | Translation | 3.5 | 18.618 | 1 | 22 |
| Osa03LNT0244400.3 | osa-miR395c | Cleavage | 4.5 | 20.164 | 1 | 21 |
| Osa03LNT0244400.3 | osa-miR395a | Cleavage | 4.5 | 20.164 | 1 | 21 |
| Osa03LNT0244400.3 | osa-miR1431 | Cleavage | 4.0 | 20.651 | 1 | 21 |
| Osa03LNT0244400.3 | osa-miR1866-5p | Cleavage | 3.5 | 14.213 | 1 | 24 |
| Osa03LNT0244400.3 | osa-miR2122 | Translation | 5.0 | 11.713 | 1 | 22 |
| Osa03LNT0244400.3 | osa-miR2868 | Cleavage | 5.0 | 13.372 | 1 | 20 |
| Osa03LNT0244400.3 | osa-miR2929 | Translation | 3.5 | 15.799 | 1 | 21 |
| Osa03LNT0244400.3 | osa-miR2931 | Cleavage | 4.0 | 10.879 | 1 | 20 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0244400.3 | 3 | Qbp1 | Resistance or Tolerance | Insect resistance | R1925 | R2443 |
| Osa03LNT0244400.3 | 3 | nan | Morphological trait | Panicle/flower | G249 | RG418 |
| Osa03LNT0244400.3 | 3 | spp3.1 | Morphological trait | Panicle/flower | RM130 | RG1356 |
| Osa03LNT0244400.3 | 3 | yld3.2 | Morphological trait | Seed | RM130 | RG1356 |
| Osa03LNT0244400.3 | 3 | QFll3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Osa03LNT0244400.3 | 3 | QSn3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)