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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0244500.1

GTCCGTAAAAAAGTGAGTGAAAATTTTTAAGCCATCAACATACTAGTATCATTATCCTTTTATGGGGCATATTTTGACACATACAGTCAATATTAGATTATGGAGTATTACGTTTAATCATATGCATATCAATCGTACAAAAAATCACCCGTGCGTAACAAACTACAGAACCAACAAAGAGAAAAAAAGGAAACGGAACCCCCGTCCACGGGAGGATAGAAACAGCAGAGATACGGATGACCCGAGAAGCACGCCGTACGTGGTGGTGCTGCATGCGCTAGGCTCCCTCCAGATCCAGCGCAGCAACCAGCGTCTACATCGGCCTCTTGCCCTATACGCATCGACGCTGGCCTGGAAGCTAATCGCCGGGCCTGAAGACCGTCGCCGCCGCACAAGGTGGAAAGCAACCTTCCCCTCCATTCCAGCTTGAACGTTGTTTCAGGGCCACCACTGCCACTGGCCGCCTACTCGTGTGCTCCCTGAACCGTGCTCCCTGAACCGACCATGAGGCACGCCATGGACGACGTAGCCGGCCGCCGCCACCCTCACGGGCTCCGAAGAATGACCACCGGCGCCGGCCTTCAGATCGGGCACCTTCAAGAGGGAGGCAGCCCGACGCCACCAATCGCCCTCTCCTACCTGGATGCATGACGACACCACCCCTCACCGATGGATCTCCTCGCCACCACTCGGGGCTCGGCCTCCACGCCATCGCCCCAACGAGCAGACCGGTCACCCGTCGCCGCTCTATCCCCAATTTCTCAGATCCGAAAAAAATGAAAGAGGACGGGAGTATGAATGGGGGTTTGGATACGGTGAGATGGTTATGGATGATATAAATAGAATTATTGGCGTGAGTAAAAAAATTACTATTGTTTGGGCTGGAGCGTTGACAGGGTGGGTTGGGGGTGGCTCTTGGTGGTGCGCGAGTTTATTGGAGTGGGGGTAGGGGTACAG

Coding Potentia
Explanation CPC Score
noncoding -1.25562
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0244500.1 3 35619913 A G
Osa03LNT0244500.1 3 35620065 C G
Osa03LNT0244500.1 3 35620147 A G
Osa03LNT0244500.1 3 35620211 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0244500.1 osa-miR167a-3p Cleavage 4.5 14.365 1 22
Osa03LNT0244500.1 osa-miR2918 Translation 5.0 15.7 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0244500.1 3 QFll3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0244500.1 3 QSn3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0244500.1 3 Qbp1 Resistance or Tolerance Insect resistance R1925 R2443
Osa03LNT0244500.1 3 nan Morphological trait Panicle/flower G249 RG418
Osa03LNT0244500.1 3 yld3.2 Morphological trait Seed RM130 RG1356
Osa03LNT0244500.1 3 spp3.1 Morphological trait Panicle/flower RM130 RG1356
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus