© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0022200.1
GATGCAAGCTGCTAATGGAGCAGGGAGAAATTAATACATCTTGAGACAAACTACAAAGCGTGTTGATGAGCAGGGAGCGGCGGTCAGTCAAACTGTTTAATATACCTCGCTGCAAACATTGTACAGAGAAACTGAGATGCCAAAACTTTCAGTGGCCCTTTGTACATGGTCATCTCTTATAACTAAAAGATCAGAGATGAATTGAATTGGCAATCTCTACAAATACATCCACTAACAAACCCAATACCACTCAAGCTGCATAGCATTAGATTACACATAGTACCTGCAATAGTGGTGAGCATTCCGGTATGGTTAAGAGGTAATAAGTAGAGGTAAATGCAAATATTATGGCAATAGAAGATGAAAATAGAGTTGAACAACAGCATACAAATGATGGATGTCAAAGCAGACTAGCGCTTCGATAGCCGCGATATCCTTGATTTGCTCTTCTCAATTGGAAAATTCCAAATGATATCGTCTAATTTGCTGCAGTAATTATTTATAAACTTGTTATAATCGGAGGTGTCTCCCGCTGCTCTTTGCAGTTCAATCATGAAGATCGATGGGGCAACTTCAAAAATTTCAAGCATAACTGCGAGATGACTTGTCTTATTTGCATTTAGACCTTCCACCCTCATCTTATAATTGCGAATGTGTGTCTTGTACCCCATTGACTGAGCAACAACCTCCATGCTTGACATGATAACCTTTGCTGGTTTGCGTGATAAAAATCTATTTTGAAGCTTGTCATAGTCCTGTCGGCGATCAAATAGTGCTGCAAGGTTCAAGCCTTGAGATAGAATTATTAGGTCGAATGCATTGAGTGTCAAAGGTCCTGCTTCGTCATCTAAAGTATGGTCAGCGTCTTCCTCAGGATCATCAAAAGCTGCATTGACATCATCAAGATTGACTTCTTCACTTTCAATTTCTCTGGTAGGTTCATAATTCTTCTTAAACCATTCATCATTCCTGATCTCTTCTATCCTGATTCTTTTATCTGGATTAGGGTCAAGAATTCTGTGAATAAGTGACTTGGCACCATTAGGAAACCAAGCTGGGAATGAATATTCTGCACTCTCTATCTTCCCGTAAAGGGTAGTCAAATCAACTTCATCAAATGGAAGATAACCTGCCAACAGGACATATAGAATAACTCCACATGACCATGTATCAGCAAGTGCTCCATCATATCCTTTATGACTGAGAACCTCTGGGGCAACATAATTTGGGGTTCCACAGGTAGTACGTAAAAGGGCACCACCCTGAGCAGGCCAGGCGCTGAGTCCAAAGTCTGATATTTTAAGATTTCCTTGGGAATCAAGGAGGAGATTTTCGGGCTTTAAATCTCGATGGTAGACACCTTTGCTGTGACAAAAATCAACACCATCAATGAGCTGCTGAAAGTATCTGCGTGCATCAGCTTCATTGAGTCTTCCATGACGAATTATTTTATCAAATAGTTCACCGCCAGTGATGAACTCCAAGATTATAAATATCTTCTTCCGGCTTGCCAAGACTTCGTGTAGTCTAACCACATTCGGATGCCTCACAAGCTTCATTATAGATATCTCTCTCTTAATCTGATCCGCCATCTTGTGCTTGAGGATGGAGGAGCGGTCGACCACCTTCATGGCGACGCTCTCCCCGCTCTCCGTGTTCTGCGCGAACTTCACCTTGGCGAACGTCCCCTCCCCGATCGTCCGCCCCACCTCGTACTTCCCCACCCGCCGCAGCGCCCCTCCGCCCACCATCGCCGCCCCTCCTCCCTCCCTCCCTGAGCTCCCTCCGCCGCCTCTCCCGGTCTCACTCCGAGACACCCAACTGGCGGCGGCCGCCGCCGACCACAGCTCCCCTACTCCACCGCTAGGGTGGTGCTCAGCTCGACATCGCCATTGAGATGGGGGAT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0022200.1 | 1 | 19469304 | A | G |
| Osa01LNT0022200.1 | 1 | 19470291 | T | G |
| Osa01LNT0022200.1 | 1 | 19470877 | A | T |
| Osa01LNT0022200.1 | 1 | 19471079 | C | G |
| Osa01LNT0022200.1 | 1 | 19471186 | C | A |
| Osa01LNT0022200.1 | 1 | 19471702 | T | G |
| Osa01LNT0022200.1 | 1 | 19471747 | T | C |
| Osa01LNT0022200.1 | 1 | 19472990 | T | G |
| Osa01LNT0022200.1 | 1 | 19473235 | T | C |
| Osa01LNT0022200.1 | 1 | 19473906 | G | A |
| Osa01LNT0022200.1 | 1 | 19477060 | G | T |
| Osa01LNT0022200.1 | 1 | 19474182 | G | A |
| Osa01LNT0022200.1 | 1 | 19474344 | T | C |
| Osa01LNT0022200.1 | 1 | 19474355 | T | C |
| Osa01LNT0022200.1 | 1 | 19474382 | T | C |
| Osa01LNT0022200.1 | 1 | 19474403 | G | A |
| Osa01LNT0022200.1 | 1 | 19474440 | T | C |
| Osa01LNT0022200.1 | 1 | 19474468 | T | C |
| Osa01LNT0022200.1 | 1 | 19475612 | T | C |
| Osa01LNT0022200.1 | 1 | 19476407 | C | A |
| Osa01LNT0022200.1 | 1 | 19476708 | C | T |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa01LNT0022200.1 | DTM_#DNAt_MULE_japo_Os0284 | Chr1 | - | 19474114 | 19475739 | 1625 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0022200.1 | osa-miR1440b | Translation | 4.0 | 10.104 | 1 | 21 |
| Osa01LNT0022200.1 | osa-miR1861o | Cleavage | 3.5 | 15.26 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR166a-5p | Translation | 4.5 | 10.703 | 1 | 21 |
| Osa01LNT0022200.1 | osa-miR166e-5p | Translation | 4.5 | 10.703 | 1 | 21 |
| Osa01LNT0022200.1 | osa-miR159d | Translation | 5.0 | 20.573 | 1 | 21 |
| Osa01LNT0022200.1 | osa-miR319a-3p.2-3p | Translation | 5.0 | 18.046 | 1 | 20 |
| Osa01LNT0022200.1 | osa-miR319b | Translation | 5.0 | 18.046 | 1 | 20 |
| Osa01LNT0022200.1 | osa-miR529b | Cleavage | 4.5 | 16.228 | 1 | 21 |
| Osa01LNT0022200.1 | osa-miR1426 | Cleavage | 5.0 | 13.225 | 1 | 21 |
| Osa01LNT0022200.1 | osa-miR1861a | Cleavage | 3.5 | 15.26 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR1861b | Cleavage | 5.0 | 15.26 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR1861b | Cleavage | 5.0 | 20.074 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR1861b | Translation | 5.0 | 21.132 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR1861d | Cleavage | 4.5 | 15.26 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR1861f | Cleavage | 5.0 | 15.26 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR1861f | Cleavage | 5.0 | 20.074 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR1861f | Translation | 5.0 | 21.132 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR1861i | Cleavage | 5.0 | 15.26 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR1861i | Cleavage | 5.0 | 20.074 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR1861i | Translation | 5.0 | 21.132 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR1861l | Cleavage | 5.0 | 15.26 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR1861l | Cleavage | 5.0 | 20.074 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR1861l | Translation | 5.0 | 21.132 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR1861n | Translation | 5.0 | 15.26 | 1 | 22 |
| Osa01LNT0022200.1 | osa-miR827 | Cleavage | 5.0 | 19.743 | 1 | 21 |
| Osa01LNT0022200.1 | osa-miR395x | Cleavage | 4.0 | 15.793 | 1 | 21 |
| Osa01LNT0022200.1 | osa-miR5525 | Translation | 5.0 | 14.266 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0022200.1 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0022200.1 | 1 | rfw1b | Resistance or Tolerance | Drought tolerance | C813 | C955 |
| Osa01LNT0022200.1 | 1 | nan | Morphological trait | Root | RM23 | RM306 |
| Osa01LNT0022200.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0022200.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0022200.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0022200.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0022200.1 | 1 | qNVB-1-1 | Morphological trait | Culm/leaf | R2159 | C178 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)