© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0245200.1
TACTCAGGACAACAAGATAATATCATCTTCAATTCAATCCCCAAACTAAACCGTCTGTATGTCCGTCTGTGATACATAGTACAAACATACATAGACAGACACAGTACGGCATATGTAAGCATGATCAAGAATGAATATACATGTGCATGCATTTCGCCCCCTTGTACTCTACATGATGGTACATGGCAGACGAGGAGTCAGTTGAGTCACCTGGATTCATTCATTAGACAGAGGCTACTTGGACGGCACACTAGTTACTGGAGTAGTAGTCACTTTGCGGTGTCCAGCTCCAGCAGCACCAGCTGCCAAGCAACCTCATGTGTTTCCTTACATTCAGACGAAGCAACACGTAGAGAACAACACGGTATCCAACTGCCATCACAAACAAAACCAGCAGATTTACCCACTTTGCGTTTGCTGAAGACGAGATGTCGTATGAGCCCCCAACTGCTTGGACACCTGGTATCGTCCTTATCGCACCGACCGCAAACGATGTGCCCACATACTCGTTCTCAAGCAAACCCTCAACTGCATACACATGGAACGAAACGTACGACAATGGGTACTTCCATACTGTGCACGGTAGACCCCCTCGGATTCGAAAATATCCACCCACAAGCATCATGATAACGTATAAGCAAATGAGAGTTAAGGTGCACTTGTAAGTGTCGAGCCAGATGTAAGCAACAATCATCATAAGTGCCTCATTTGCCAACAGGCACATGAACATGGTCACCACAAAATACATAAACAAGTTGAACTCATTCCTGAGTCCTATCAGGAAGTAGAAAACCAGCGATGACGAAATAGTGACCAGAAATAGAAACGGAATACTGGACAGGAAGTGCCCTAGCAGGAAAACCATTGTACTCGAATGCTGATTCGCTTCCTCATGGGAATATATCTTGATCTCATCAATATGGGCAGGAACTCCAGAAACACTTAGAAGGATGACAAATGATACATACACAAATATTGCAGAAACCCTTACCATTACAGATGATAATGAATGACCAGCGTTGTTAAATATGGTGCCGACTGAGAGGGCAAGAAGCATATACAAGGCAAATCTGCTCCAGAAATATTTCCGATTTCTTGACATTATTACCAATGATCTCCAGGTGAGAACACCGATTCGTGTTGTATTACTGGCTCTGCCTTTACTTTTCAAGTGAGGACCTTCCTGCAGCACATCATGTAAGAAAAAAGAAGGGGACGGATTAATGTAAAACCACACAACATCAATTATATGTGCACTGCAATACTGGGTAGTAGTACTAACTATCCTAAACTATATTGTACTGGATTTTAAGGCCCCCATAATTAGTGTGGTTTAGATTACACCAGGACAACCAGGTTGCCGTATTCCCTGTTGCTAGCTGTGTCTTGATTGGAGGCTGGAGCACAACCAAAATTCTCCAAAGGGAACAGGAGCATCAGGTTGTAAACCATTATAACAACATCCAGAAAGATGTGCAACAATCTTTGTGGCTGTGCCAACTTCTCCATCAATTTCGCAACCAGTGATTCAACAGCAACAGAGTCAGCTGATGACTTGTATGTTGCTTCCAGCGTACGGATTGCCACAGCTGTGTCCATGCTCACTGATGAAAAGTCCCCTTGATCATCCTGTTAGTAACTGCAAATTTTTGCACATGGCTATGATTCTGTCAAAATCAGTATTGATTGCCCGCAAGAAGTGATCAGATGGACTTTGCATGATTGGACATGGAAAGCCAGCATTTGAGAAGTGCTGTAGGCAAGACAATGTTTCTCCAAAAAAGAGTGTATTCCCATTTGAAAGCAAGCAGATTCGATCGAAAAGTCCAAAAACTTCTGTACTGCTTTGATACATTGTGAAGATGACTGTGCATCCTGTGCTCGCAAGTTTCTTCAATGTTACCATCAGTAGAAGTGCAGAAACACTGTCAAGATGATAGAGAGGCTCGTCGATAAACAGAACGTGTGGTCTCATCACTAGCTCTCTTGCAATGCTGAGGCGCCTCCGTTCTCCAGCTGGGAGGCTGTTGATAAAACAGTGGCCACCAATGAGGTTGTCAGCATAGTCAGCTAAGGACATGGCTGCGATAGCATCTTCGACTATGGAGGTCTTTGAGGAGAATAGGCCCGGAAGCTGCAAGTGCGCGGAGTAGTATAGCATCTCCCGTACTGTGAGAGAGTCGATTAGCACATCGTGTCGATCAACAAAACCATAAGATCCATAAGGCAAGCGTGTGTTGGTGGCGTTGAGCAAGACTTGGCCGTACATCCGCTCGGCGGGGCGCAGGCGGCCAGCGATTGCCCGGAGAAGAGTGGATTTGCCGGAGCGGGCGGGGCCCATGATGACGGTGAGGGTGCCTGGGAGCGCGTAGCCGGTGGAGCTCTTGACGACGCGGCGGTCAGCTGAGCCTGAGCCTGAGCGTGAGCGAGTGAGGGAGACGCTGAGCTCCTTCCACACCAGGGTGGCACCGGCCACCTTGCGCTCTCCTCCTCTGCAGGCGGCGGAGGAGGAGGAGGGCGTCGGACTCGGAGAGGGGTAAGCGGTGGTGGGAAGGGACGCCGACGCCGATGCGGTTGCGAGGTGGATGGAGTCGACGTCGTCGTCGGCCCAGTCGGGGGAGTCCTCGAAGGAGATGGGTCGCGCGGGCCTGGCGGGCAGGTAGTAATGGCGGCGGCCCATGGCGAGGGCGGCGGCGGGGCTGCTCGCCGACGAAGACGATGACCGGTACGGGTCCATATGCCTACTGCCTACTAGGAGTACTCCAGTAGCTAGCTAGTACTAGTAACAAGCAACAACTAGTACATACTAGTAGCTTATTACTCCTAGCTTGTGGAGGTGAAGGAGAAGGAGAAGATTGGATGCCGCGACGGCTTTGGCATTGCGATTTGCAATTTGGAAGGAAGAAGAAGAAGAAGCAGCGGCCTGCGCTGCGAGGGGAAAAGCCCCAGCAAGCTACT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0245200.1 | 3 | 36273610 | A | G |
| Osa03LNT0245200.1 | 3 | 36273720 | A | T |
| Osa03LNT0245200.1 | 3 | 36273794 | G | A |
| Osa03LNT0245200.1 | 3 | 36274578 | A | G |
| Osa03LNT0245200.1 | 3 | 36274998 | G | A |
| Osa03LNT0245200.1 | 3 | 36275287 | T | C |
| Osa03LNT0245200.1 | 3 | 36277415 | A | G |
| Osa03LNT0245200.1 | 3 | 36277420 | T | C |
| Osa03LNT0245200.1 | 3 | 36277508 | A | C |
| Osa03LNT0245200.1 | 3 | 36277516 | T | C |
| Osa03LNT0245200.1 | 3 | 36277601 | T | C |
| Osa03LNT0245200.1 | 3 | 36278492 | G | A |
| Osa03LNT0245200.1 | 3 | 36274329 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0245200.1 | osa-miR5179 | Translation | 5.0 | 19.783 | 1 | 21 |
| Osa03LNT0245200.1 | osa-miR167a-3p | Cleavage | 4.5 | 21.481 | 1 | 22 |
| Osa03LNT0245200.1 | osa-miR435 | Cleavage | 4.5 | 17.367 | 1 | 20 |
| Osa03LNT0245200.1 | osa-miR530-5p | Translation | 4.5 | 16.451 | 1 | 20 |
| Osa03LNT0245200.1 | osa-miR1865-3p | Translation | 4.5 | 21.832 | 1 | 24 |
| Osa03LNT0245200.1 | osa-miR1875 | Cleavage | 4.5 | 20.239 | 1 | 24 |
| Osa03LNT0245200.1 | osa-miR2093-3p | Cleavage | 5.0 | 21.749 | 1 | 20 |
| Osa03LNT0245200.1 | osa-miR2099-3p | Translation | 4.5 | 16.972 | 1 | 20 |
| Osa03LNT0245200.1 | osa-miR5160 | Translation | 4.5 | 20.065 | 1 | 22 |
| Osa03LNT0245200.1 | osa-miR2275d | Cleavage | 4.5 | 16.251 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0245200.1 | 3 | qSV-3-2 | Physiological trait | Germination/dormancy | RM227 | RM85 |
| Osa03LNT0245200.1 | 3 | Qbp1 | Resistance or Tolerance | Insect resistance | R1925 | R2443 |
| Osa03LNT0245200.1 | 3 | qLT3-1 | Morphological trait | Shoot/Seedling | RM227 | R1925 |
| Osa03LNT0245200.1 | 3 | Qsbn3b | Morphological trait | Panicle/flower | RM227 | RM85 |
| Osa03LNT0245200.1 | 3 | Qsnp3b | Morphological trait | Panicle/flower | RM227 | RM85 |
| Osa03LNT0245200.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | R1925 | RG1356 |
| Osa03LNT0245200.1 | 3 | nan | Morphological trait | Panicle/flower | G249 | RG418 |
| Osa03LNT0245200.1 | 3 | nan | Morphological trait | Root | R1925 | RG1356 |
| Osa03LNT0245200.1 | 3 | qPL3-1 | Morphological trait | Panicle/flower | R1925 | RM227 |
| Osa03LNT0245200.1 | 3 | QFll3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Osa03LNT0245200.1 | 3 | QSn3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)