>Osa04LNT0246000.1

ATCCACCACGCCGCCTCGAGCGGCGCAGGCGCTGCCTCTCCTCGCCCCGTCGCGCGGCGCCGGCGCCGGCGCCTCTCACCGCATCCGCCCGCGCCGCCGCCTCCTCTCGCCGCAGATGTCGCCGCCGCCTCCTGTCGCCGCAGAAGTCGCCGCCGCCGCCGCCTCACGTCGGATCTGCACGTGCCGTCTCACCGGATCTGCGGGCGCCGCATCCCTTTGTTCACCGGTGCCGGCGCCTCCTCCCTTCCTCCCACGGTGCACGACCTCGGCGCAGCCTTCTCTTCTCCCCACGGCAAGCAGGTAATGGAGCTACTGATAGCCTTGCAGTAATGCCTTCTGCTCTTGCACTTACGGAGAATTTGGATTTTTGGGACTCTTACTTTCTGTTTGTATGAAATGAATGTAATTAGTTTTCAGTGGCTTATCCTAGCTGATTGTGGTGATGAATATGATGTTTAAATGAGTAAATCATGTATTGTGAATGGGTGACTGATTGTGGTGACTGAATGGATATGATGCAAGCAATTTTTAGAACATTC

Explanation	CPC Score
noncoding	-1.26863

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0246000.1	4	835614	T	G
Osa04LNT0246000.1	4	835738	C	A
Osa04LNT0246000.1	4	836046	G	A
Osa04LNT0246000.1	4	836266	C	A
Osa04LNT0246000.1	4	836316	T	C
Osa04LNT0246000.1	4	836455	A	G
Osa04LNT0246000.1	4	836978	T	C
Osa04LNT0246000.1	4	836281	A	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0246000.1	osa-miR2104	Cleavage	4.5	17.811	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0246000.1	4	qCTS4-1	Resistance or Tolerance	Cold tolerance	RM335	RM261
Osa04LNT0246000.1	4	qSNP-4a	Morphological trait	Panicle/flower	RM401	RM335
Osa04LNT0246000.1	4	nan	Resistance or Tolerance	Other soil stress tolerance	C946	R1854
Osa04LNT0246000.1	4	qOVA-4	Resistance or Tolerance	Insect resistance	R1854	C946

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus