© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0246100.1
AATTTTTGGGATCCCCCCACTACATGGCCCTGTGGGTCTATTTATAGCCTTAGCACAGGCTTACACCTTCTAGGTTTAGGTTTACAGGGGATTTTACATGGTTGCCCTTATAAAAGGGACATTTACATGGGTACGCAGTGTCATTTGCATATATGGGCCTCTTGGCGAAGGGGCCTTAAAGGTCGGGGGCCGCCTGTTGGGCCTCCTTGATGCCGAACTCGTCATGGCAAAGTCTTTGTGGTTCGTCATACGCCCTTCGCCCGAGATGCCTTCGCCCGAGAAGCCTTTACTTGCGGGGTACCGACGCGGCTTTCCATCTTCGCTTATGGCTTTCGCCATAGGGCTTCGCCCAACTGGTCTTGACGGCTTTACAGTCTTCGCCACCTTCGCTTATGGCTTTCGCCATAGGGTTTCGCCCAAGTGGTCTTGACGGCTTTGGCTTGAATCCTTGATGGTACTATGGTTTCGGCAGGTCCGGCCGAAGGGCTTCATGGCATGCCTCCAACATTGAGTATGGGACTTATCGCCCATCATGAATGGGACGTTCTTCTTCATGAGACTGACCATAATTGTTGATTTGTAACATCTAAACTTCCATTGTAGCAAGCATACGGAAGCAGAAAATGGCAGGAGCTCATGCAACAGTAACAGCAGACAGGTCCCATGTCCTGTAGTCTAACATCAAATAATTTCTTACTGGATAGAATGAACAACTTGAGAAACTCAGCTGGTACGAACTCTCAAGTTGCACCTCACAGCTTGTCCTGAGCACCAATGCTTCATATGCAATACATCGTAATCTTCCAGATGAAATTAATTGTCTTCTGGAAACCGTCCCATCCAAGGTGAGTATGGAAAAAACTTTTGTATAAATGGCTGAATGCCCACCTCTGTTCCATAATTTGTTGGACGGAGGCTGCCCAAGTCTTGAATCTTTGAGCTATTTAAGTGGTAGGCCAATCCTCTTCTCAACGAATCACTCAAGAAGATAACCTCCTTGTAAGGGTGAAATCCAAGAAAATCAATATAACCACCAGAGTTATATCTGCCCCTCCTTGTAGTGTCAACAAGAAAATTAATATAACCACCAGATCCCCTGCTGTTGGTCTCAATAACATTATCATTGTCTGAGTCCCATTCAAACCTGTCCTCTACCACTGCCTCATTGTTACCGTCTTCATACTCAAATCCCCGCTCCTGATTGTTAATATCTTGTAAAGTCCAGGGTCCAGGCCCGTCAATTATTTGACATGGCTGAATACTACACGAATCCTTGCATACCCACTCCATTCTGTCACTCGATTCATCAAGAATATAGATCAAAAAACGGGATGCCAAGTGACGCACAGCACAGTACACCCCTTTCATTGATTTTCCCAAATAAAGATTTGTGTATGCCATCCCCTCACAATCTGAAGGTGGCTTGATTACTTGATATTTCCCATTGGATAATGATATTCTCATAACATACTTGTTTTGGCAATATACATAAAGTACTCCCCGGCAATAAACAGAAGTGTCTGGAACATAAACAGAAGTGTCTGGAACATATGGGTGATCCAACCGCATGTCAGAAACATTCCCTGCAGCCTCCCCTTCTCGAACAAATGACCTCTCCTCCCACACCTTTGTCCTTGATGAGAACACATGCAGGATGCAAGGCGACGGTGGCCATTCTAATTCCTCTATTGCAGGGTCTAACTTGTCATCTGAATTCAACATGTTATACCACACATTGGATCGTCGGATCTCAGGGATCATGAATACCTCAAAATGCGGTGACAACGTGGGGTCGAAGACAAGGTACTCCCTGTGGAAAATGTGCTCTACGACCATATATGGGCATGGGGGCAGTGGCGCCGACTGTCGTGTGGCTGGGTTAACCACATACTTGTGAAACAAGAGAAGCCCATTGCAGTGGTCTATAATGCAGGAGCTGCAAGGCAAATAGTCAAAGTTGCCAGATACCGTTGGGCCTTTTGAGGGGCGGGAGAAGAACTCTGACATGCTTAACTCATTAAAGTTAATGAAGATTCCACACAACGGCCGTGGGAGGAGGTCCACATGCAGCAGGTTGTGGGCCTCGATGATGGTACACCAGGTCTTGCAGACGCAGCGGGATATGGCAAGGTAGCGTGGTGCAAGACGGTGGATGATGTTGCTGAGCACATCTTCAGGTAGCAGGTTTTCCATGCCCTCTATCGTTCCAAATTCTCTTAAGATGGCCATTTATTCCTTCATATCCACACAAACCCCACTTCTATCTGCACAGTAAAAATAAAATAAAAATTAGATTTCTCTAACAAACATGATTTCATGATAAATCCATACTAAATACTTTCTATATGATGTGATTTGTCATATCAAACGTAGAGTAGAGATGGTGCCGATCCTTGAGCATCCCAATGGGAGTAGAGATGGTTACGTTGCCAGCATGAGTGGTTTTCTCCTGGATTGGGCGGGGGCATCAGGTGATTGCCCCAAATGCGTAGCAAGCGGAGGGCAATGCACATATGGCGACGGCCTGCGATTCGCCTGCAATTGCACCGACGGGCTGCACCCTGGTTGCAAGAAACAGGATGCAGTAGCAGATGCAACCGATTGTCTCGTGGCAGGCGAGGCGCGGATCCAAATCCTAACCCGCCGCGCCGCGCGAAATTTATGCGCAGAGGAACCCGCGGATCCAAATCCTAACCCAACGCGCCGCGCGCGGTGTCCTCGTCTCTCCACGCCGACGAGGCCGCGGCGGCTCGACCGCTCCGGCTAAATTTCACCTCCGTTTTGGGGTGGGTTGGGATTGCCGGCCAACTCCCCCGCGGCGCGTGCCCTAGTCCCTGAGCCGGTGCGCGGCGTGGCGTCGCGACGACGCGGTGGCTCACT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0246100.1 | 4 | 793747 | A | G |
| Osa04LNT0246100.1 | 4 | 793861 | A | G |
| Osa04LNT0246100.1 | 4 | 793929 | G | A |
| Osa04LNT0246100.1 | 4 | 793998 | A | G |
| Osa04LNT0246100.1 | 4 | 794036 | T | C |
| Osa04LNT0246100.1 | 4 | 794758 | T | C |
| Osa04LNT0246100.1 | 4 | 795123 | A | G |
| Osa04LNT0246100.1 | 4 | 795166 | C | T |
| Osa04LNT0246100.1 | 4 | 795261 | T | C |
| Osa04LNT0246100.1 | 4 | 795513 | T | G |
| Osa04LNT0246100.1 | 4 | 795660 | A | G |
| Osa04LNT0246100.1 | 4 | 795754 | A | C |
| Osa04LNT0246100.1 | 4 | 795813 | T | C |
| Osa04LNT0246100.1 | 4 | 795819 | A | G |
| Osa04LNT0246100.1 | 4 | 797110 | A | G |
| Osa04LNT0246100.1 | 4 | 797915 | A | G |
| Osa04LNT0246100.1 | 4 | 793581 | A | C |
| Osa04LNT0246100.1 | 4 | 798726 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0246100.1 | osa-miR5796 | Cleavage | 4.0 | 17.865 | 1 | 21 |
| Osa04LNT0246100.1 | osa-miR5835 | Cleavage | 5.0 | 14.686 | 1 | 24 |
| Osa04LNT0246100.1 | osa-miR6248 | Translation | 4.5 | 5.999 | 1 | 21 |
| Osa04LNT0246100.1 | osa-miR6248 | Translation | 5.0 | 22.581 | 1 | 21 |
| Osa04LNT0246100.1 | osa-miR530-5p | Translation | 4.0 | 24.079 | 1 | 20 |
| Osa04LNT0246100.1 | osa-miR1436 | Cleavage | 4.5 | 21.711 | 1 | 21 |
| Osa04LNT0246100.1 | osa-miR5152-5p | Translation | 4.5 | 21.201 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0246100.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Osa04LNT0246100.1 | 4 | qOVA-4 | Resistance or Tolerance | Insect resistance | R1854 | C946 |
| Osa04LNT0246100.1 | 4 | nan | Resistance or Tolerance | Other soil stress tolerance | C946 | R1854 |
| Osa04LNT0246100.1 | 4 | qCTS4-1 | Resistance or Tolerance | Cold tolerance | RM335 | RM261 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)