\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0246200.1

ACATTTCATCGAACACCTTGTGTGCATGCTTCATCATCACCGGTTGGAACCGAAGCCGGCGTAGCTGACCGCGGGAACCGTCGCTCGGGCCGCCTCTACTTCCTCTGCTGCCTTGGATCAACGTCGGGAACCACGCATCGAACACCTGCAAGCGTCGCCGACCGCTAGCCGCCCCTGTTTCGTCCGCACTGAGCTACGCGCCGCCGAACTTCGCCATCCCGCTGTCTCTCGAAGCCGGTGATGAAGTCTCGGATGACCCATATGCTTACTACCAGGAGGGTGAAGAAGATGGTGGCGCTTAGTAGGTCTTAGTTACGGTCGTCGCCTGTGGCAATGGCGTCGCCGCTGCCTTGATTCCGCTGCTTATCTATTTCTGCTTTTGGGATGTATTCCGGACCGTTTGGTCCTATGTTCTAGACTATGCCTGCGGGCCTATGATGTAATTATTCGCGCTAGACAATCTTTGTATGCGCACTTGATATTTCAGCAATGTAATCGTGAGTACCAGACTACTTGATACAGGGAAATGGTACTATTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.283616
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0246200.1 4 938892 A C
Osa04LNT0246200.1 4 939120 G A
Osa04LNT0246200.1 4 939608 G A
Osa04LNT0246200.1 4 938362 A G
Osa04LNT0246200.1 4 939140 G A
Osa04LNT0246200.1 4 939546 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0246200.1 osa-miR166d-5p Cleavage 5.0 18.316 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0246200.1 4 qSNP-4a Morphological trait Panicle/flower RM401 RM335
Osa04LNT0246200.1 4 nan Resistance or Tolerance Other soil stress tolerance C946 R1854
Osa04LNT0246200.1 4 qOVA-4 Resistance or Tolerance Insect resistance R1854 C946
Osa04LNT0246200.1 4 qCTS4-1 Resistance or Tolerance Cold tolerance RM335 RM261
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus