>Osa04LNT0246200.2

ACATTTCATCGAACACCTTGTGTGCATGCTTCATCATCACCGGTTGGAACCGAAGCCGGCGTAGCTGACCGCGGGAACCGTCGCTCGGGCCGCCTCTACTTCCTCTGCTGCCTTGGATCAACGTCGGGAACCACGCATCGAACACCTGCAAGCGTCGCCGACCGCTAGCCGCCCCTGTTTCGTCCGCACTGAGCTACGCGCCGCCGAACTTCGCCATCCCGCTGTCTCTCGATTCCGAGGGAGTGGTTGAGTTGACTGCAGAACAGGGACATCAAATCTGTGAGCAAGAAGCCGGTGATGAAGTCTCGGATGACCCATATGCTTACTACCAGGAGGGTGAAGAAGATGGTGGCGCTTAGTAGGTCTTAGTTACGGTCGTCGCCTGTGGCAATGGCGTCGCCGCTGCCTTGATTCCGCTGCTTATCTATTTCTGCTTTTGGGATGTATTCCGGACCGTTTGGTCCTATGTTCTAGACTATGCCTGCGGGCCTATGATGTAATTATTCGCGCTAGACAATCTTTGTATGCGCACTTGATATTTCAGCAATGTAATCGTGAGTACCAGACTACTTGATACAGGGAAATGGTACTATTC

Explanation	CPC Score
noncoding (weak)	-0.122431

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0246200.2	4	938892	A	C
Osa04LNT0246200.2	4	939120	G	A
Osa04LNT0246200.2	4	939140	G	A
Osa04LNT0246200.2	4	939546	A	G
Osa04LNT0246200.2	4	939608	G	A
Osa04LNT0246200.2	4	938362	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0246200.2	osa-miR5532	Cleavage	4.5	16.829	1	22
Osa04LNT0246200.2	osa-miR166d-5p	Cleavage	5.0	18.316	1	21
Osa04LNT0246200.2	osa-miR2864.1	Translation	4.5	19.743	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0246200.2	4	nan	Resistance or Tolerance	Other soil stress tolerance	C946	R1854
Osa04LNT0246200.2	4	qOVA-4	Resistance or Tolerance	Insect resistance	R1854	C946
Osa04LNT0246200.2	4	qCTS4-1	Resistance or Tolerance	Cold tolerance	RM335	RM261
Osa04LNT0246200.2	4	qSNP-4a	Morphological trait	Panicle/flower	RM401	RM335

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus