>Osa04LNT0247200.1

TGTTGACACGCATTCGTGTTCATCTCAACCGAGAGTAACCACCAGCGCGCCGCGCCGTGACGCCATCGGACGCCGGGCCACCTTAATTGCTGGCTGCCGGTGTTCGTCTTCCCCCTGCATCTCGTCGCCGTCGATTCCGATAAGCTGACCTGACCACCAGCGGAAGCCACCGCTCGCCGCGGGCGCCGCCTGAGCCGACGTGGTGGACCTGGTGGCAATCTTTTTTCCACCGATGATTGTGCTCAATTAATCCTCTACCCTTTGCACGGTGATCTCCTACTCCTCTTCTTTGCGGCCACCTTTACTTGCTCTTGCCATGGTGGAGATGGTACACCCCAAGTGAATGCACACCAACTGTTCGACGAATTGCGCAGCTAACAAGGCAAACCGTGGATTGGCTAACTTTATCTAATTAAGAAATTTATTATAGATCATGTTGTCTTGCTTTCTGTGAAATATTCATTCATGATGTTGTCTTGCATCCTGTTTGGTTTTAAAAAAACAAATAAACTAGTTTATGG

Explanation	CPC Score
noncoding	-1.11465

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0247200.1	4	1716379	T	G
Osa04LNT0247200.1	4	1716576	A	C
Osa04LNT0247200.1	4	1716796	C	T
Osa04LNT0247200.1	4	1716807	T	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0247200.1	osa-miR810b.1	Cleavage	4.0	15.139	1	21
Osa04LNT0247200.1	osa-miR1428b	Translation	4.0	14.146	1	21
Osa04LNT0247200.1	osa-miR1428c	Translation	4.0	14.146	1	21
Osa04LNT0247200.1	osa-miR1428d	Translation	4.0	14.146	1	21
Osa04LNT0247200.1	osa-miR1428e-3p	Translation	4.0	14.146	1	21
Osa04LNT0247200.1	osa-miR1868	Translation	4.0	13.057	1	24
Osa04LNT0247200.1	osa-miR5160	Cleavage	5.0	11.914	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0247200.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456
Osa04LNT0247200.1	4	nan	Resistance or Tolerance	Other soil stress tolerance	C946	R1854
Osa04LNT0247200.1	4	qOVA-4	Resistance or Tolerance	Insect resistance	R1854	C946
Osa04LNT0247200.1	4	qCTS4-1	Resistance or Tolerance	Cold tolerance	RM335	RM261
Osa04LNT0247200.1	4	qSNP-4a	Morphological trait	Panicle/flower	RM401	RM335

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus