© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0248000.1
CACACCAACTCAATTTCTGAAATCATCAATAGGTGAAAAGGTTCTGCCGTTGAGGTTACCTAATACAGCATGACAAGGCGCTCTGCAAGTCGACACAAAAAAAAGTAACAACCTCCAGCTGATAGGGGGGGCCACTCAACTATGTTATAGAACAACATCTGGCTGTCAACCATAAAAGTTTTTCGTTCTTGTTTTGTAACCTGGCAGTTAAATCTTCACCAGATCACTTTGCATTGACATGTACAGAGTAAATCGCAGGTTGCAGATGAGTGACTCAACGATGCATTGCTCTATACTAACCCACATGACACAGATACTAGCTAGGAACCTAGCTGCATCGTCAACTGGTTCGTGATTCGTGGACAGACGTGCTTCGAACCTAACTATCTCCTTATTACAGGGCCTTTATACAAACCTCTCGCGACAACAAAGCCCTCTGGAGGTTGATGGTCCTCCAATTCCTCCAACCAAATTACTTCTGCGCTATTTATTTCACCAGGCAAAACAACAGGTGGTGTTTCCCTTACTGAAGACTTCCGGAAGTATGAACAGTCCCTCCCCTTCTCAGCAGAATAAGGAGGAGAAAGGACATCAAAGAGAGCACAAGGTGTGATCGCTCTGAAAGTGTGGATGTTACCACCTCTATTGGGATAAAGAATGGTGGTCTCTGGAGCAGACATTTCACGGTCTCTGACAAGCCTTGCTGGTCTCACTGAAAGTTCCTGTAATTGATCGGTTGGATCAGTTACATCAATCCAATCATAAGATTCAGCATGCAGTGTGCCATAGAGAAGCTTGCTCAGAACTGTCATTCCTGGGTGATTGTGAAGTGGAATAACTGATGACGGCGGCATACAAAATATACCCATAGAGAAACTTTCACTTTCATGAATGTGTAAATATTTGATTGGAGATGTGAACTGGTTAGCCCCATTACGTCCTCTTCTTCCATTTGGTTGACGCGTTGAATTATTCCAATTACGAGCAATCTGTGCTTCATTGTCTAGGCCAACATCTATAGGTCTTATCTCATCTAACAATGCACGAACTCTCTCAAGTGCTTCATCGGATATGGGCCCATCCGGAGAAAATGATACTTTACAAGCATTAGACAGGCTCTTTATTTTTGGCATCTTGCACTTCGATGTGCTATTGAGAATATCGGAATTGTCAAACCTTCAAAAGACTGAGTGAATTTGGAACGTGATAATTGCTCAACGGATCCCCACAGTTGTGGCGATAAAGCACAGGCTGTCAATTTTAGCACCTCTCAAACAAGAGGCAGATGTAGTGAAATTGGACAAAATAGTAGTGCACAGCTCCAAGAACTGCAAATCAAGCAATCGTTTTTGGGATGTGCACTCATTTCCACTTTTAAGTCATGCTGTGAAAAGCTGCCCTTCGTCCAAGCGCGACACCCTGCGACCCGCGGAGGAGGCGGGGGGATGGAGGGCCGAGGCGAGGCGAGAGAGGGGCGGAACCGGCGGCGAGGAGGAGGCGCAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0248000.1 | 4 | 3580589 | G | A |
| Osa04LNT0248000.1 | 4 | 3575475 | T | C |
| Osa04LNT0248000.1 | 4 | 3575488 | A | G |
| Osa04LNT0248000.1 | 4 | 3575846 | A | G |
| Osa04LNT0248000.1 | 4 | 3576487 | A | T |
| Osa04LNT0248000.1 | 4 | 3576506 | A | T |
| Osa04LNT0248000.1 | 4 | 3576859 | T | C |
| Osa04LNT0248000.1 | 4 | 3577487 | A | C |
| Osa04LNT0248000.1 | 4 | 3577719 | C | T |
| Osa04LNT0248000.1 | 4 | 3577843 | C | A |
| Osa04LNT0248000.1 | 4 | 3577858 | A | G |
| Osa04LNT0248000.1 | 4 | 3577970 | A | C |
| Osa04LNT0248000.1 | 4 | 3578214 | T | A |
| Osa04LNT0248000.1 | 4 | 3578477 | A | G |
| Osa04LNT0248000.1 | 4 | 3578560 | A | G |
| Osa04LNT0248000.1 | 4 | 3578837 | A | G |
| Osa04LNT0248000.1 | 4 | 3579130 | A | G |
| Osa04LNT0248000.1 | 4 | 3579243 | T | G |
| Osa04LNT0248000.1 | 4 | 3579267 | A | G |
| Osa04LNT0248000.1 | 4 | 3579287 | T | C |
| Osa04LNT0248000.1 | 4 | 3579478 | C | T |
| Osa04LNT0248000.1 | 4 | 3579483 | T | C |
| Osa04LNT0248000.1 | 4 | 3579504 | C | A |
| Osa04LNT0248000.1 | 4 | 3579524 | T | C |
| Osa04LNT0248000.1 | 4 | 3579577 | G | A |
| Osa04LNT0248000.1 | 4 | 3579644 | A | G |
| Osa04LNT0248000.1 | 4 | 3579701 | T | C |
| Osa04LNT0248000.1 | 4 | 3580047 | A | G |
| Osa04LNT0248000.1 | 4 | 3580066 | A | G |
| Osa04LNT0248000.1 | 4 | 3580347 | A | G |
| Osa04LNT0248000.1 | 4 | 3580476 | A | G |
| Osa04LNT0248000.1 | 4 | 3581314 | C | A |
| Osa04LNT0248000.1 | 4 | 3581406 | C | A |
| Osa04LNT0248000.1 | 4 | 3581448 | A | G |
| Osa04LNT0248000.1 | 4 | 3581528 | T | C |
| Osa04LNT0248000.1 | 4 | 3579652 | A | C |
| Osa04LNT0248000.1 | 4 | 3575440 | G | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0248000.1 | osa-miR6250 | Translation | 3.5 | 11.555 | 1 | 22 |
| Osa04LNT0248000.1 | osa-miR395b | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395d | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395e | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395g | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395h | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395i | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395j | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395k | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395l | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395s | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395a | Cleavage | 4.5 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395f | Translation | 4.5 | 15.675 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395u | Cleavage | 4.5 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR160e-3p | Cleavage | 5.0 | 17.639 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395m | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395n | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395p | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395q | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395r | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR1858a | Cleavage | 2.5 | 15.659 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR1858b | Cleavage | 2.5 | 15.659 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR1320-5p | Cleavage | 4.0 | 15.093 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR2091-5p | Translation | 4.0 | 13.022 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR2105 | Translation | 3.5 | 12.115 | 1 | 20 |
| Osa04LNT0248000.1 | osa-miR2905 | Cleavage | 3.5 | 13.607 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR395y | Cleavage | 5.0 | 16.34 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR5144-5p | Cleavage | 3.5 | 19.234 | 1 | 21 |
| Osa04LNT0248000.1 | osa-miR5521 | Cleavage | 5.0 | 17.602 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0248000.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Osa04LNT0248000.1 | 4 | nan | Resistance or Tolerance | Other soil stress tolerance | C946 | R1854 |
| Osa04LNT0248000.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Osa04LNT0248000.1 | 4 | qCTS4-1 | Resistance or Tolerance | Cold tolerance | RM335 | RM261 |
| Osa04LNT0248000.1 | 4 | qOVA-4 | Resistance or Tolerance | Insect resistance | R1854 | C946 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)