>Osa04LNT0248300.2

CGGCGCCGCTCCGCTCGCGCGCGGCTGCGCCCGCCCCTCACGCGTCGCCGGGTCGCTGCCTCCCGCCGCCGCCTCTCGTGCGAGCCCGCCGCCCCAACTCCGCTCGCCGGGCTGCGCTCCCGATTCCCCTAGCCCGCTACCTCCCGCCGGAGCCGTCATCGAGCGGGCCACATCGCCGCCGCCGCCTCCTACCCCCACGCCGTCCAGTCCCCCACCCCTACCGCCTTCGTCGAACCGCCGCGGACTCCGGTTCCCGATCCAACCGCCGACGCCGTTCTTCTCATCTACTAGCGCTGGGAGGTCATCCGCCGTCGCCGTCACTTCGCGCAGGGCGCCCAGCTCCTCGCCCGTGCGCGCGCCGCCGCCGCTTCCACTGGCGCGGGGACCAAGAAGCCCCCCGGCCCACTCGCCCGCGCGGCGCTCGCCGAGGCCGACCGTGCCATCGCTTCTCCTCCTCCCCACACCGCCCTCACCTGCGCCATCTCCACGGCCCTCCCAGCTCCACCCCCCCGCCCTGCCCTCCACATGCCCGCCGCTTCCGCGCCGCGCCGTCGATCTCCGGTGACGTCGTGCCCCAAGCCATTGGTTATCCCTTCTCATGCTGATCTGATTTTTCTGCTTTGCCGTCTTTCCTTCAACACTGCTGAACAAATGGCTTCGATCTGTGTGAGGGTCTTCACGCTATCGTCCACCTTCTCTACCCCGCCGGTACAGGAAGACGACGCCGGAGCACGGGGCAACGTCGAGGAAGATGACTGACAGTACATTGCTTTGTGCCATGCTCCTCTACTGCACCGTGCGACTGTTTTTTTTCAGGCTGGGATGTGGGATCGAGCACACCGTGATGATTGGGAACATTTCCAAGGACAGATTGATGGAGTAAGCGTTTTTTTGATGCTTCAAGGATTCATTTTGTTGCCTTCAATTGTAACAGGAGAAATGCCAATAAGTGAAGGCATTAGATTCAATCCCAAAGTTTGTCCTTTTGCTTCTAAAGCAGTAGTGCCAGACCATTCAGTAAAATTCATCTGAATTCAAAGTGTTCCAACTGTGGCGTCTTGCTTCTGAACAGATCCCCAACTTGCACTTGATGCGATGGTTCCGTTTTGCTGCTAAAATTCAGGTTCAATTGAATATCTTTTAATTCAGAGCTGCAAGTACATATTCAATTAAATACCTTTTCTTTTCCTTTTCATTTTCTGCTAAAAAGCTAGGTTCAATTGAATACCCTCTCCAACCTAATTTTCTATTTACTCAGATGTATGTACCTATTAACTCAGAAATGAAGATGGTAGGATAGCCTAGGTTTGGAGACTATTTTTAGTTCATGACTTCATATATCACTCGCTTAGATTTTACTAATCTTTGTTGATATGTGCAACCTAATTTTCTATTGTTTAAGATTTTTGTTCCTATTAACTTTGAAGCAGGATAACGTAGGTTCAAAGACTTTTTTAGTTCAGTTCAGGGCTTCAGATAGCACTAGCTAATGCCGTCGACAACGTGTAACATGGAACCTTTCCTTTTTACCCAACCAATGACCATATTGCATAGTTTTAGTTTTTCTTATACTGAAATTGATGAGGTGGTTATTATCCTTAGTTCTTCTACCTTCAAATTTCATTTGTTTTCCCTTTATGAGAATTATTCGGTTGTCAGGTGATGCAAATGTAGTAAAAGAATGTAATCGCATTAACTGATTTGATCAAAGCACAAAACAGAAGTGCAATTGATCACCATCTGCAGTACAGGACAGCTTTATTCGTTGTAAGGTGCTATGACTGGACATCAAAAGATGCTTGCAACCTAATCAGACAATCCATTTAAACCTAACTGAAGAATATAACAAATCAGGCTTCCTGCTTTGCTTGATTTCCAAATTCATGTAGGCAGAAACAGTATGGATATCACCGATCATCAGCACGTAAGTTTGGACAGTGCAACAAAACTTGTCTGTATTTCCTCGATCTGAATGCGTGGAAGGAAAGGAAATTTTCAACTTGGAGATCTATCTGCTACTGATGAATTCCCGCTTCTCAGTTTACATGGAGATGAGTTAATCTGGGTAGTCAGTGGAAGACCATAAAAAGAATGTTGTTGTATTCATGATGCCACGTACCACCAATCATATACCGCTGGAATATTTACTTCGACTTCCAAATTAATTATCATGTAACACTCTTAAACTATATGAAATATTCCCTTCCAATTAGATTAATCATTTTTCAAA

Explanation	CPC Score
noncoding (weak)	-0.785523

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0248300.2	osa-miR5527	Translation	5.0	17.921	1	21
Osa04LNT0248300.2	osa-miR5819	Cleavage	5.0	19.937	1	21
Osa04LNT0248300.2	osa-miR5828	Cleavage	4.5	16.99	1	21
Osa04LNT0248300.2	osa-miR5837.2	Translation	3.5	21.563	1	21
Osa04LNT0248300.2	osa-miR1440b	Cleavage	4.0	14.208	1	21
Osa04LNT0248300.2	osa-miR435	Translation	5.0	12.188	1	20
Osa04LNT0248300.2	osa-miR1854-3p	Cleavage	4.0	16.053	1	22
Osa04LNT0248300.2	osa-miR1854-3p	Cleavage	4.5	19.436	1	22
Osa04LNT0248300.2	osa-miR2121a	Translation	4.5	12.895	1	24
Osa04LNT0248300.2	osa-miR2121b	Translation	4.5	12.895	1	24
Osa04LNT0248300.2	osa-miR2873b	Cleavage	3.5	13.718	1	21
Osa04LNT0248300.2	osa-miR5511	Translation	4.5	14.524	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0248300.2	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456
Osa04LNT0248300.2	4	nan	Resistance or Tolerance	Other soil stress tolerance	C946	R1854
Osa04LNT0248300.2	4	qOVA-4	Resistance or Tolerance	Insect resistance	R1854	C946
Osa04LNT0248300.2	4	qCTS4-1	Resistance or Tolerance	Cold tolerance	RM335	RM261
Osa04LNT0248300.2	4	qSNP-4a	Morphological trait	Panicle/flower	RM401	RM335

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus