© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0248400.1
GCCTAGAGCAAGGAACAGTTAATCATACTACTGTGCAATGTATGCAAAACTACTTTACACAAAGGATAAAACTAGAAAATGGTACATGTGATACCTTCAAGGAAGCATCGGTAAAAATGCTACCGCTGTTCTCTTTTTCACCTTGTGGATATAATGAATCCATGTGATTGTTCACATATCAGTGCCACTACACTCTATCAAAACTTGCCTCCCAACTTCAATCGCAAGCTTCGGTCAAATCTTCCGCAGCGGTAAGCAACTTGTTCAAATGATTGGCTTGCACTTAAGCATTTACATTTCCGTCCTTTGACTGAAAAAGCATATGGAGACGCTTCCAGAAATTCCTTCCTGAAGATGGGGCATTAAGCTGCACGCAAGCCTTGAAATTTGCTTCCTCTTTATCTGTCCAGGAAAGTGCGATTTCCTCTCCCATACGATCAAATCCCCATGCATAGAAAGCTGAATCAAGTTCACGTCGCAGCTGAAGTCTCCTTTCTGCAACATGAAACCTAACACATTCTACAGATCCTGGAAGGTTGCAGCCACAAACACCTTCTCTACCTTTTCCAACAGGGTTACAAAAATATGATAATTTCCTGTTACCATTTTCCAGAGGCCAGACCTTTGTGCCCAACCATTTCCTGGTTTCTGCATTATCATAGCTTACAGGCAACTCACCAGTCCATTGTGGTACTTGTGCTTGGAACTCAGAGCCCACTGGTATTTTGTTCCTCTGCTGACTCGTAAAAAGCCAGTTGTCAGAGTTATGATGTTTCCTACTCTCATATTTCGCTTGTCCAATAATGTTGTTCTCTTGCTCCATTCCAATTGAAGGCACATTTATGTTTTCTACAACATTTATCAATTCATTAATATCTGAACCAGCCTGTGGAATGACAAGTTGAATCTTTTTACTGCATTTTTCTTGTGTGTCAATTCCAGTAGTGCTGGAACTCATGCAGCACTTGCAATCCATTGGAAATATTTCCTGCATGAGTGCACCATTCATCGTCATGCTCGAGCGGCGAGCCCTCTTCGCGAACACCGCCTTCCTCGCTGCCAACGCCAACGAGTAGTACCCATTCGCCGAGCCGGCAGCCATGGTGCCTGCCTCACCGCCATTCTCGGCAAGCTCCCTGACCCAATCCAACATCCCAACCATGTCCTCCCTCTTCCTCTTCAAGATTGGATGCTGCAGATCTCCCCCATTGCATTCCAAGAGTGGTTCTTCATTCTCCCTTCCATTGGAATCGAAGAATGGCTCTGGCTTCTTCCTCCCGTCGTTGCCATCCAGGAAGGGTCCATGCGCCTCCACGAGCCTCTGGATCCAGCGGTCCAGGGCGGCGAGGTACTTGTGGTAGATTAGCTTGACGGGCGCGGCGAGGGTGGCGTCGAGGCAAACGGACTCGGCGGCGGAGGCCCAGACGGCGGGGGACGACGACGTCGCGGCGTAGCCGCCGGCGGCGCGGATGGCGGAGAAGAGGCGGAGCAGGTCGACGCGGCTCCCGTCGCCGAGCTTCGCCGGGAGAGGGCGCACCTCGCGGCCGCCCGGGTAGACCTCGCGGAGGAACGCGGCGAGGACGGTGTCGAACAGGTCCGAGGGGGGGCCGGAGGCCGCGGCGTCGCCGATCCGGAGATGGGCGCAGAAGCCGAGAGACTGCAGCTTGCTGAGGATGGAGAGGATGACGCCGGCGGAGTCCATGGGCAGGGGAGGCCTCGCCGGCGGCGAGGTCACGGCGGTGGGCCACGGTGGCGCATTCTTTTTCCCTTTTTTGTGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0248400.1 | 4 | 4509179 | T | C |
| Osa04LNT0248400.1 | 4 | 4509410 | C | T |
| Osa04LNT0248400.1 | 4 | 4509540 | A | T |
| Osa04LNT0248400.1 | 4 | 4509553 | A | T |
| Osa04LNT0248400.1 | 4 | 4509563 | C | A |
| Osa04LNT0248400.1 | 4 | 4509722 | T | C |
| Osa04LNT0248400.1 | 4 | 4510481 | A | G |
| Osa04LNT0248400.1 | 4 | 4510529 | C | A |
| Osa04LNT0248400.1 | 4 | 4510586 | C | A |
| Osa04LNT0248400.1 | 4 | 4510595 | A | G |
| Osa04LNT0248400.1 | 4 | 4510660 | A | T |
| Osa04LNT0248400.1 | 4 | 4510760 | T | C |
| Osa04LNT0248400.1 | 4 | 4510845 | T | G |
| Osa04LNT0248400.1 | 4 | 4510859 | T | G |
| Osa04LNT0248400.1 | 4 | 4511673 | T | C |
| Osa04LNT0248400.1 | 4 | 4512096 | C | T |
| Osa04LNT0248400.1 | 4 | 4509479 | A | C |
| Osa04LNT0248400.1 | 4 | 4512162 | G | A |
| Osa04LNT0248400.1 | 4 | 4512301 | T | A |
| Osa04LNT0248400.1 | 4 | 4512537 | C | A |
| Osa04LNT0248400.1 | 4 | 4512643 | A | G |
| Osa04LNT0248400.1 | 4 | 4512691 | T | C |
| Osa04LNT0248400.1 | 4 | 4512761 | T | C |
| Osa04LNT0248400.1 | 4 | 4512793 | A | G |
| Osa04LNT0248400.1 | 4 | 4512805 | T | C |
| Osa04LNT0248400.1 | 4 | 4512831 | A | G |
| Osa04LNT0248400.1 | 4 | 4512855 | T | C |
| Osa04LNT0248400.1 | 4 | 4512922 | A | T |
| Osa04LNT0248400.1 | 4 | 4512944 | A | G |
| Osa04LNT0248400.1 | 4 | 4512947 | A | G |
| Osa04LNT0248400.1 | 4 | 4513116 | T | C |
| Osa04LNT0248400.1 | 4 | 4513126 | A | G |
| Osa04LNT0248400.1 | 4 | 4513332 | T | C |
| Osa04LNT0248400.1 | 4 | 4513727 | C | A |
| Osa04LNT0248400.1 | 4 | 4511689 | A | G |
| Osa04LNT0248400.1 | 4 | 4512693 | G | A |
| Osa04LNT0248400.1 | 4 | 4510062 | C | A |
| Osa04LNT0248400.1 | 4 | 4510274 | C | T |
| Osa04LNT0248400.1 | 4 | 4510350 | A | T |
| Osa04LNT0248400.1 | 4 | 4510476 | A | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0248400.1 | osa-miR5512b | Cleavage | 4.5 | 16.939 | 1 | 21 |
| Osa04LNT0248400.1 | osa-miR2105 | Cleavage | 4.5 | 14.334 | 1 | 20 |
| Osa04LNT0248400.1 | osa-miR5512a | Cleavage | 4.5 | 16.939 | 1 | 21 |
| Osa04LNT0248400.1 | osa-miR2868 | Cleavage | 4.0 | 11.774 | 1 | 20 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0248400.1 | 4 | qCTS4-1 | Resistance or Tolerance | Cold tolerance | RM335 | RM261 |
| Osa04LNT0248400.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Osa04LNT0248400.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)