>Osa04LNT0248500.1

CTTGCCGCTACTCGTCGTCACCGGCTTCACCTTCCTAGACGACGACGACGACGTCGCCATGGACAGCACCTTGTGCACCAGCGGCTCGGCCACCATGGCTTCCAAATCGAACAAAAGATTCACCCAAAAAGGCTAAACCTTTCACCTTTGCGCGTCAAAGCCAGCAAAAAAGTAGTGAGAAAAAAATCCCTCCGCTTTTGCACCAAATCCAAGCTAACCAAGAAACCAACCACGAAGCTGCCGATTGAATTCAAATCAAATCCCCGTCGATTTGAATTCAAACCCAAATCCTCCGAGATGTCAACCAACACATCGCAGCATCGCCATTACCAAACAAACAAGAGACGAAATGGGAAAAGAAAGCCAGAGGAATTTCCTCGGGTGGTGTTCCAAAGAAAGCAAGAAGCAATGGGTGGAAGACGAAGAAGAAGAAACAATGGGGGAGGAGGGGTTTCGAATCGATTCAGGGGCAAGAAGAAGTTGAAGAGGAGGTGGAGCTATGAGGACGCCATTGATGCGGGGCTTCACTGGCTTCACTGCTCGGCCTCCAACCCTTCGCTGGTGGCCATTAATATCGCCATAAATCGCAGCGGAGCAACGCAACAAAAGCAACAAGCTCA

Explanation	CPC Score
noncoding (weak)	-0.798143

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0248500.1	4	4772450	C	T
Osa04LNT0248500.1	4	4772197	C	A
Osa04LNT0248500.1	4	4772383	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0248500.1	osa-miR1857-5p	Cleavage	4.0	22.919	1	21
Osa04LNT0248500.1	osa-miR413	Cleavage	5.0	21.306	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0248500.1	4	qSNP-4a	Morphological trait	Panicle/flower	RM401	RM335
Osa04LNT0248500.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456
Osa04LNT0248500.1	4	qCTS4-1	Resistance or Tolerance	Cold tolerance	RM335	RM261

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus