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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0022700.1

CCTTTTAATTGTCTGTATAACTGTATTAATTGACTTTACTCCCTTGATTTAATTAAAAAAATAGCAGACCTTCTGTTGTTCCATTGAGACTGGGCCTAAACTCGTGTTGTCTGGACTGGAACTACCATCTGTTGCTTACTGATAGCTGCCTGTTCACTTTTCTTGGCCCAAAGAACACAATAAAGACCACCAACCATTACCACTCCGCTTATTATGCTTCCCAGGGTGACTGCTTCTCCTAATACAAATGAGGACAGCATTATTGTGACAAGAAGAGTTATGGGCATTGTCATGGCCAAAAAGACCGGCCCACTCTTGTCAATAACCCATACTTGCATGTAATATGCAACTCCCGAGACAAGTACCCCTGAGTAGATCACAGCAATAAGGCCCATATCCAGGTGCAGCTTCCATCGTGAAAAATCCCTCTCAATCGCCAGAGCGATGAAGAAACACTGAATAGTTGCAAAGACTATCTGGATGGTTGTGTTGAGGAGCTTAGAGGGGTATACCTCCAACATAGGACCCTGAAGCACTGTCCAAAGTGCCCAACATGTTGTTGATAAAGTCGTCAGAAAAATTCCTAATATCCATGTCGTTGCAGGATGTGAAGTAGCCGCAGCATAGACAGTACTCGTGCGAAAAAGATGGTGATGGTTGAATGATTTCAACTCAGGTCCTTGGTAGAACGCAAGTATGATGACACCAACAATGCACAACACTACACCAGAAACTTTTGCAATTCCATTGATCCTCTTCAAGTTCAGGGACTCCATCTTCATCAGAAGAGCCAAGATGAAAGCCACCGCCGGTAGAAGGTTAAATATCGCAGATGATGATGTTGCTGAGGCATAACTGAGACCAAGGCTATATATGTTTATCGCCCCAGAAATCCCATATAATGCATGCAAAAATAGTTTCAGAGACACTTTGAATGTCAGTGGTGGAGCAGTTTTCCTTTCTAGCACAAATGCGACGGGAACCAAGAACAGGATAGCAATCACATGCCTGTAGAAAACAAAGACAGATGTGCTCATGCCTTCATTGAAGGCAAATTTTGTTACAATCTGCATCCCTCCATATAGGGACCTTATGAGGAATGCAACCACAAAAGCCGCTCTAGTGCCCATTGGTACAGTCT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.890904
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0022700.1 1 20297139 C A
Osa01LNT0022700.1 1 20297611 A G
Osa01LNT0022700.1 1 20297972 G T
Osa01LNT0022700.1 1 20299059 A G
Osa01LNT0022700.1 1 20299430 T G
Osa01LNT0022700.1 1 20299501 A G
Osa01LNT0022700.1 1 20299974 C G
Osa01LNT0022700.1 1 20300141 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0022700.1 osa-miR6253 Cleavage 4.0 11.837 1 22
Osa01LNT0022700.1 osa-miR395f Cleavage 5.0 13.198 1 21
Osa01LNT0022700.1 osa-miR444a-5p Translation 4.5 19.803 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0022700.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0022700.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0022700.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0022700.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0022700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0022700.1 1 qNVB-1-1 Morphological trait Culm/leaf R2159 C178
Osa01LNT0022700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0022700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus