© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0249300.1
GTCAAGAATAACGGATGCAACTCATGCACAGCATACAATTTCCTGACCTCACAAAGCATGTCTACACGATCTCATGGAGGTGTATCCTGATGCGACAATACGAGTTACAGGGTTAGTAGATTACTGTGAAAATAGATGTTCTACATGCAATGCTACTTCTAACTGAAGGGTTAGTACATCCGGGTCCCTTCTTGATGAACCTTCTGCTATATCCAAAGGTTTCCACCATGAAGTGCACTCAATTCACCCTACATCCCATGACAGTCTTCATAAAAATTACCTGTTATGAATTGTAGTAACACATTGCCTGTGCCTGAAGAAAATAAGAATCCCTATATTTTCTCCCACTCCCTATGTGGACACCATTTTTAGCCCAATCTTCTCTATGTATCCAAGCATCACGACCAATATCAAGTACGCCCAAAATCACACCACCTTTCCATGGGACAAATAATGGATAACTCCTCGACTGTAATACCTCTGCTTTCTCTATCGGTTGATTTGATGGAATAGTATTGAGAACCCTTTGTTCTAGAACTGGTGCAAGGCCTGCTGTTGAAGCTGTACCACCAACCAGCTGAATGCTGCAGAATAGCTTCCTTTGAAGCTCAATACGTCCTGTCGAAAGGATACTACTAACAATGGCTTCTACAAGACCGATGTTATCAAACTTTTTTAATCTGGTGGGAAACATCGGATAATTGTCCCACATACCGAACCCACCATTCCCACTTGAGTAAAGACTGTCACTTGTTTGCCATGTATCTTCTAACATGTCATCATAATCTTGGAACCAAGATCGAGGAGGTGGAGGGTATTCTTCTGGGACAAGAACCCTTGGATAAAGTAGCCCCATAGGAGGTACATTCAGAGCCGATAGCTTTGTTTTCTGATGACCAACTGATTTTTCATGCTCATATGAATGAACAACACTGACAGCATCAAAACTTCCACTTCTTATCTGGCTGTATGACTCTTTTAGTTTGTTGAGCATTAGCATATCTATAGGCTTGTTCACTGGATCAGTTTGGAAGTTTGGCCATGTGCAATGACGACGTTGAACCCAAAGAAGGCATCTAGATATGTCATCTCCACCGTATGGAAGCGCCAGGGCTGTGTGGGGTAAAGCAACACCATCCTCAACACAAACTACTTGTGTAACTTGCGCGCCAATGTTGACCACACAAGATGTCGACAAGCCATTTCCAAATGCTGCAGCTAGAGCTTCCTGATGTATCACTGCTGTGCTAAAACCCAAATCGCAAAGTACGATTGACAACATTTCCTTGATTTCTCGGTTATCAAATGTCTCTCCTAGAACAAGAATTGCAGAATACAGATGCCGATCTCTTGGATTTATATGCAATTTTTCTGTCAATATCCAGTTCCAAATAGTGCGCAAATCTTCTAAAACCTGATGTAATGAATAATCCTGAGAAATATTGAAATGGCCTCTCCTGATCGGGTGACTCAGACAGTATGACTCAGAAGGTGGGATTTTCAAAGCATCCTCTCCAAATATTATTTCTTTATACATGTTTTCTTCAGAATTAGGCTCAGTATCGTCAGGAGTTGATCTTTGCAGGGGATCCACGTCAGCATCCTTGTCAACTGGCCTTTCAATTGGTGTAGATGATTTAATACTTCTGTCCATTACATCTGTCCATGTGAATTTACTATCATCTTTGTTTTGCTGTGAAGAAAGGGCATCAACACGTCCCATCTTAGGAGGTAACGCCTGGTTCGCTGAAGGCATGTCTTCATCCAAAAAGGGTATTTTGAGCAGCGATGCAATAATATCATATGCCCTCTCCCGCTCTGCATTCTGCGATGGAGTTGCATGGCAGTTGAGCATCTTGTCTCGCACAGAAAGCCTTGGTGTATCATCCTTCTGCTGAGTGATATGTCGAGCAATGCAGTGCGGTATATTGAATGGAACATCCTGACTTGCGAACCCAATGCGCACATTTGAAGATCCTGGGTTGATGACGACGAGGTTGGCGCCGCGCTCGGCCATCAGCTGTGATGGAACCACCGTCTTGAGGTAATCCATATTTTCTCCCCGGAGAAGGCGTCGCGCGCGTCGGAAGGGAAGGGAAGGGAGCGCCGGAGTCGGAGGCGACGGCCTCGTCGGGGACGCGCTCGT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0249300.1 | 4 | 5300676 | A | G |
| Osa04LNT0249300.1 | 4 | 5292255 | G | A |
| Osa04LNT0249300.1 | 4 | 5299019 | A | C |
| Osa04LNT0249300.1 | 4 | 5291209 | G | A |
| Osa04LNT0249300.1 | 4 | 5291486 | C | T |
| Osa04LNT0249300.1 | 4 | 5291590 | C | T |
| Osa04LNT0249300.1 | 4 | 5291686 | C | T |
| Osa04LNT0249300.1 | 4 | 5291778 | A | G |
| Osa04LNT0249300.1 | 4 | 5292211 | T | G |
| Osa04LNT0249300.1 | 4 | 5292497 | A | G |
| Osa04LNT0249300.1 | 4 | 5293074 | C | T |
| Osa04LNT0249300.1 | 4 | 5293098 | A | G |
| Osa04LNT0249300.1 | 4 | 5293403 | A | G |
| Osa04LNT0249300.1 | 4 | 5293602 | T | C |
| Osa04LNT0249300.1 | 4 | 5294353 | A | G |
| Osa04LNT0249300.1 | 4 | 5295069 | A | G |
| Osa04LNT0249300.1 | 4 | 5295095 | A | C |
| Osa04LNT0249300.1 | 4 | 5295169 | T | C |
| Osa04LNT0249300.1 | 4 | 5295978 | T | C |
| Osa04LNT0249300.1 | 4 | 5296006 | A | G |
| Osa04LNT0249300.1 | 4 | 5297013 | A | G |
| Osa04LNT0249300.1 | 4 | 5297258 | T | G |
| Osa04LNT0249300.1 | 4 | 5297438 | T | C |
| Osa04LNT0249300.1 | 4 | 5298248 | A | G |
| Osa04LNT0249300.1 | 4 | 5298275 | A | G |
| Osa04LNT0249300.1 | 4 | 5298332 | C | T |
| Osa04LNT0249300.1 | 4 | 5298524 | A | C |
| Osa04LNT0249300.1 | 4 | 5298534 | T | A |
| Osa04LNT0249300.1 | 4 | 5298674 | A | G |
| Osa04LNT0249300.1 | 4 | 5298921 | A | G |
| Osa04LNT0249300.1 | 4 | 5298926 | T | C |
| Osa04LNT0249300.1 | 4 | 5299259 | A | G |
| Osa04LNT0249300.1 | 4 | 5301513 | A | T |
| Osa04LNT0249300.1 | 4 | 5301785 | C | T |
| Osa04LNT0249300.1 | 4 | 5302026 | A | G |
| Osa04LNT0249300.1 | 4 | 5302805 | T | C |
| Osa04LNT0249300.1 | 4 | 5302854 | G | A |
| Osa04LNT0249300.1 | 4 | 5302943 | G | C |
| Osa04LNT0249300.1 | 4 | 5302972 | A | T |
| Osa04LNT0249300.1 | 4 | 5303220 | A | G |
| Osa04LNT0249300.1 | 4 | 5303379 | A | T |
| Osa04LNT0249300.1 | 4 | 5303430 | A | T |
| Osa04LNT0249300.1 | 4 | 5304020 | G | C |
| Osa04LNT0249300.1 | 4 | 5304577 | C | T |
| Osa04LNT0249300.1 | 4 | 5305179 | G | A |
| Osa04LNT0249300.1 | 4 | 5305563 | T | C |
| Osa04LNT0249300.1 | 4 | 5305945 | G | A |
| Osa04LNT0249300.1 | 4 | 5306234 | A | G |
| Osa04LNT0249300.1 | 4 | 5293736 | A | G |
| Osa04LNT0249300.1 | 4 | 5298140 | T | C |
| Osa04LNT0249300.1 | 4 | 5303948 | G | A |
| Osa04LNT0249300.1 | 4 | 5299278 | A | G |
| Osa04LNT0249300.1 | 4 | 5300155 | T | C |
| Osa04LNT0249300.1 | 4 | 5301035 | T | G |
| Osa04LNT0249300.1 | 4 | 5301109 | T | A |
| Osa04LNT0249300.1 | 4 | 5301363 | G | T |
| Osa04LNT0249300.1 | 4 | 5295791 | G | A |
| Osa04LNT0249300.1 | 4 | 5305285 | T | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0249300.1 | osa-miR6245 | Cleavage | 5.0 | 16.502 | 1 | 21 |
| Osa04LNT0249300.1 | osa-miR1440b | Translation | 4.0 | 15.981 | 1 | 21 |
| Osa04LNT0249300.1 | osa-miR5512b | Translation | 5.0 | 15.704 | 1 | 21 |
| Osa04LNT0249300.1 | osa-miR166e-3p | Cleavage | 5.0 | 15.706 | 1 | 21 |
| Osa04LNT0249300.1 | osa-miR160f-3p | Cleavage | 5.0 | 15.828 | 1 | 21 |
| Osa04LNT0249300.1 | osa-miR168a-5p | Cleavage | 5.0 | 18.708 | 1 | 21 |
| Osa04LNT0249300.1 | osa-miR172c | Cleavage | 5.0 | 19.105 | 1 | 21 |
| Osa04LNT0249300.1 | osa-miR814a | Cleavage | 5.0 | 14.389 | 1 | 22 |
| Osa04LNT0249300.1 | osa-miR814b | Cleavage | 5.0 | 14.389 | 1 | 22 |
| Osa04LNT0249300.1 | osa-miR814c | Cleavage | 5.0 | 14.389 | 1 | 22 |
| Osa04LNT0249300.1 | osa-miR2055 | Cleavage | 4.0 | 19.625 | 1 | 21 |
| Osa04LNT0249300.1 | osa-miR2055 | Cleavage | 4.5 | 10.186 | 1 | 21 |
| Osa04LNT0249300.1 | osa-miR827 | Translation | 5.0 | 14.38 | 1 | 21 |
| Osa04LNT0249300.1 | osa-miR2093-5p | Cleavage | 5.0 | 17.322 | 1 | 20 |
| Osa04LNT0249300.1 | osa-miR2101-3p | Cleavage | 5.0 | 12.344 | 1 | 22 |
| Osa04LNT0249300.1 | osa-miR2866 | Cleavage | 4.5 | 13.874 | 1 | 20 |
| Osa04LNT0249300.1 | osa-miR3981-3p | Cleavage | 4.0 | 15.899 | 1 | 21 |
| Osa04LNT0249300.1 | osa-miR5338 | Cleavage | 4.5 | 14.318 | 1 | 21 |
| Osa04LNT0249300.1 | osa-miR5512a | Translation | 5.0 | 15.704 | 1 | 21 |
| Osa04LNT0249300.1 | osa-miR5788 | Cleavage | 4.0 | 16.817 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0249300.1 | 4 | qCTS4-1 | Resistance or Tolerance | Cold tolerance | RM335 | RM261 |
| Osa04LNT0249300.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Osa04LNT0249300.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)