>Osa04LNT0249500.1

GGATCAACCATTTTCTTTGTTCGAACAGCATTGGCATAAGAAAAACCTGGTCTGACTGAAGAGATTTTACTTGATTTCAAAGATTTGGACTTAACCATAACCCCCATTCCCGATCCTTCTGAATGATCCATTGGGAGTATTCCCTGTACCAATCAGGGCCCCCATTTCTCCATAGGTGAAAGAACAACTTGAAATGATGACAGGCGTAGGAACTCAAGGAATAGATGCGCAAACCAACATGTTTGCTCGCAACAATTGTTTTGCAAATTTCGAAAATGAAAACCATTCGGATCACCACCAAGACAGCAACATAAAGCCAAGGCTACATATTGTTCTGTCAAACGGAACTTGAATCGAGAAAAACAAACCACTAGCTTGAAAGGAGTAGCTTGGATGAAAAACCTGGAGAGAAATGGACCGTGGAATTAAGAGAAGCGATTTCTGATTTCCGTAGCAAAAGCCAAACCAGGAGAGAAATCCAGGCCATCTGCAAAAGAGAGATCCTCCATAGCAAGGAGAAGATCAAGCCTTCAGAAATCAGGATCCCCTCCCCGTCGCCACCCAATCGCCTCTATGCAAAAACTGGACATCGCCTCTCCAAACTCACCCTATAATTGTATGGATAATAATT

Explanation	CPC Score
noncoding	-1.01423

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0249500.1	4	5417227	T	C
Osa04LNT0249500.1	4	5417304	C	G
Osa04LNT0249500.1	4	5417314	A	G
Osa04LNT0249500.1	4	5417661	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0249500.1	osa-miR166i-5p	Cleavage	4.0	15.425	1	21
Osa04LNT0249500.1	osa-miR1860-3p	Cleavage	4.5	17.146	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0249500.1	4	qCTS4-1	Resistance or Tolerance	Cold tolerance	RM335	RM261
Osa04LNT0249500.1	4	qSNP-4a	Morphological trait	Panicle/flower	RM401	RM335
Osa04LNT0249500.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus