Transcript

Sequence

>Osa04LNT0249900.1

TGATATAGGGCTAACACAAGTTCATTTCATCACTCAAATCGTACATTACACAAACCAGCCAAACTCAGTTGTCCAGTGTGGTTGTATTATTTTTCCATATGCAATAAACTACAAGGAAGTCTCCTTGATTTACATAGGCATGATACATGCCTTACAGTAGTCTAGGGTGCATATTGGATACACCCATAATGCTCATGTCTTTATATTCCCATAATATGATCCAACTCCATCTGTCCTAGACATTTATTTGTTTAAGTATTATTAGCTAGTATCATAATATAGGTAAAGAAGGCCACATTTATTCTAGGACTGGGCAGGCTAGAAACATTCTAAGGACAGTGTTCTGTTTTCCCAATATACTGACAGTACCAATCTGGGGATCGATGACGTGGTGACATAGTGCCATCTGTCTGTCCATCAGTAGTACTGACCATGAGCTTTCTTTCATTAGAATCTGCACCTGAATTCTCTCCTTTGTTCATAACTCCACTGTTTGAGTGAGTATTAGCACCATAAGCTGCATGATTATGACCATCAGTTCTACCAAGGAAAAGATCTTCTGAATTTCCTTGTGTCACATCAGCAATTACAATTCCTACGAAGAAGAATGCCATGACCGCTAATGCAAAAAGATTTGCCTTCCTGGCGCTCATGATTTTGCTTAGCAGATGCTCTGAAGGAGG

Coding Potentia

Explanation	CPC Score
noncoding	-1.2524

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0249900.1	4	5924103	C	G
Osa04LNT0249900.1	4	5924608	T	C
Osa04LNT0249900.1	4	5924429	A	C

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0249900.1	osa-miR1849	Cleavage	5.0	15.212	1	21

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0249900.1	4	qCTS4-1	Resistance or Tolerance	Cold tolerance	RM335	RM261
Osa04LNT0249900.1	4	qSNP-4a	Morphological trait	Panicle/flower	RM401	RM335
Osa04LNT0249900.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus