>Osa04LNT0250100.1

GAAAAAGAGTCACAACATTATATCAAAATTAATCAATCATATTAATTGAACAATTACCAAACATTCACAACAAAATACTAATACAAATACACACCCAATATTACACAACCACATATCCGACAATAATTAATGGTTATGACTTCTCCTTACAATGGAAAACAACATACATGTAAGTAAAAAACAGAGAGAAACACATATGCATGCTTGACTCTGTTGTACAATTAATTAGTCGAGCTAGCAAGAAAACGCCATGCATTAAGCGAGCTGGTGTTTTATTCTAGCTGAATTTGCCATGCATGCAGAATCGTACATCTGCTTGCAAAAAAAAAAAGAAAAGAAAGAAAGTAAAAAAAGAAAGAAATTAATAGCTCCATGCAGACCCTTGTTTGCATGGTCAATTAATTAGTTGCCAAGTGACCACATGAGATAATGATGGACAACCTTAGCATGGCTTGATGCAGATACAGTTTCGCACGAAGGTGCTGCACCTGCCGTCGACGAACCCCTCCGTCCGACACACGTTTGCGCAATTATCTTCCACCATGCAAAACCCCTCGAATCGGAGGCTCTTCGTCTCGCACGGCCTGACTGATGATTGCGCTGGCGCCAACGCCTCAGTGGCAACAACAAGAAGTAGGAGGACGGCGATTGCTGGGAAGAATTTACGCATTGTCTCCATTACAATTATTATGTTAGTACTAACCACACACTTCTCAGAAAATTAATATATATTTTCAAATTATTCAGTC

Explanation	CPC Score
noncoding	-1.16495

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0250100.1	4	6096467	A	G
Osa04LNT0250100.1	4	6096575	C	A
Osa04LNT0250100.1	4	6096678	A	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0250100.1	osa-miR1862f	Cleavage	4.0	5.343	1	20
Osa04LNT0250100.1	osa-miR1862g	Cleavage	4.0	5.343	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0250100.1	4	qCTS4-1	Resistance or Tolerance	Cold tolerance	RM335	RM261
Osa04LNT0250100.1	4	qSNP-4a	Morphological trait	Panicle/flower	RM401	RM335
Osa04LNT0250100.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus