\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0250100.2

GAAAAAGAGTCACAACATTATATCAAAATTAATCAATCATATTAATTGAACAATTACCAAACATTCACAACAAAATACTAATACAAATACACACCCAATATTACACAACCACATATCCGACAATAATTAATGGTTATGACTTCTCCTTACAATGGAAAACAACATACATGTAAGTAAAAAACAGAGAGAAACACATATGCATGCTTGACTCTGTTGTACAATTAATTAGTCGAGCTAGCAAGAAAACGCCATGCATTAAGCGAGCTGGTGTTTTATTCTAGCTGAATTTGCCATGCATGCAGAATCGTACATCTTAGCATGGCTTGATGCAGATACAGTTTCGCACGAAGGTGCTGCACCTGCCGTCGACGAACCCCTCCGTCCGACACACGTTTGCGCAATTATCTTCCACCATGCAAAACCCCTCGAATCGGAGGCTCTTCGTCTCGCACGGCCTGACTGATGATTGCGCTGGCGCCAACGCCTCAGTGGCAACAACAAGAAGTAGGAGGACGGCGATTGCTGGGAAGAATTTACGCATTGTCTCCATTACAATTATTATGTTAGTACTAACCACACACTTCTCAGAAAATTAATATATATTTTCAAATTATTCAGTC

Coding Potentia
Explanation CPC Score
noncoding -1.34601
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0250100.2 4 6096575 C A
Osa04LNT0250100.2 4 6096678 A T
Osa04LNT0250100.2 4 6096467 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0250100.2 osa-miR1862f Cleavage 4.0 5.343 1 20
Osa04LNT0250100.2 osa-miR1862g Cleavage 4.0 5.343 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0250100.2 4 spp4-2 Morphological trait Panicle/flower RG449 CDO456
Osa04LNT0250100.2 4 qCTS4-1 Resistance or Tolerance Cold tolerance RM335 RM261
Osa04LNT0250100.2 4 qSNP-4a Morphological trait Panicle/flower RM401 RM335
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus