© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0250300.1
GGGAGGGCAATGCCACCATGTGCGCCACCCCCGTCCACGTCATGTGCCATCCCACACGCCAAGCATGCCACGCAACTAGACGCACTCCGGCTTGAGCCAGCAAGCCACAAGCAAATACAGACGCAACAAGACAAGGAAAAAAAACAGAAAAAAAAAAAGAACCAACAAGAAATGTTCCATCAGAAATAGACTTCAAAACCATTAGTTCATTACAAACAATCTAGATCAGTCATATGCTGAACCCAGATAAGAGATAAACTTGATATATCCACCAATGACCAATCACTGTAGGGACTTTAGTGTTGTTCTTCCAAGTATATGAATCTTGTATGGATCGATCATCGATGTCGGTGACCGTTGTAGTCAATTGAATCTACCTGAGAATAGAGCCTTTGGGCAAGGCCTTCTTATAGTATTGCGCTGACTGCCGCTTGTAGAGCAATGACTGATCATAGCCACCTTCTTTCTGAGGCCACACTAGGTTATCCCACCAATCCTTCTCACAGTATACTATGGGTCTTGGTTCATGCAATCCTTGGACGTCAGGCAGGTGTCTAAGACTACAGCAGCCCCTGATCATGATGGCCTCCAGCATGGGAGCTGACATTATTTTTGCCTCACATATCCCTTTCAAGCTGGGAAGCTCATGCAGGTGGACGTGCTTCAGCTTTGGGAAATCAATAGCATCATTGCTTACTGTCCCCTTGGAGTTTGCTGTGTTCAAAGGGAAAACATATATGAGGCTGGTGCAGTACAGGATCTGAATGGTCTCCAAGCTTGGTAAGTTGTTGGACAAGGGAAGTACATGGATGAGCCTAGGACAGGAATCCAGATGTATATACTGCAGTTTCTTGAAGGAATCAACATTTACATGCTTGACTTCCATGCTCCAAATGCAGTGGGCTGTTTGGAGATGTGATGCCCAGAAGGTCTCTAGCCAAGAGAAAGCTACGATTTGGTCATGGTCTCTGAGTTTGAATACAGAATGTAACTTGGGGCATCTCTCAATACAGCACCACTTAATCCGACCCCAATTTGATCCAGGAATACTAGTCATCCAAGAGTCATCATGCACGTTTAGAGAGTGTACAATGTCTATGAAATTTCCCAAGATATTGTCATTCCCCTGCAATTGTTTTCTGTTTCTGATCTCTACCTTGCAGCTTCTGTTGCACTTTGACTCTAAAGGCAGAGGCGGGCAAGGACAAATCACAGGGGCAACACTAAGTGCAACAACTCTGTCAAATATATCACTGCACATATTCCCTGCAACTGTTCGATCAACATGGGCATTCCTTATTTGTTCACTACTGCACTGCTTACTTTGTCCTTCATCTTTGCAATAATTAACAAAAACAGGTGACATGCAGAAATGCACATGGTGACTTTGCATTGCAAACAACTGTAGAAACCGAAGAAGCCTAGGATCCATGATAACAACATGTGATTGGAATAATTTATCATCATCCTGGACAGGTGACAAGCTATTTTGTCGTTTGCCTTCCAGATGTACTCCAACTGTATCTACATGTAACTCATCCAATTGTGGTTTTGTAACATCTGACCACTTTATTGCACAAAGATGCAGACAACCAAACAGAAGAAGACGATTAAGTTTTTCTGCCTGCATGGCATCCAGGTCAAGTTTTTCCAATATTGTGCCGGAAAGATCCAATTCCTCAAGTTTTGGCAGTCCACTCAAGATTAGCTTTTTTAACCGGCAACATCCAGATAATGAGATTTTTGTAATATTTGCTGCCTTTGGATACTGTTCTGATGCTGCAACTAAGCTGAATTCCTCAAGTGATACCGGAAGGTTGCTATCACTGACAGAATCCAACCCAACACAACCATCAAGAGTGACAGTCTTCAGACATGTTGCCTTGGACAGGTCAGGAAAAGCTTGCATGGTAGAGTTACCTGACAAGTCTAGAATCTCCATCTTTTCCATACCTGAGAATGTGAATGTGAATGGATCCTTTTCATCTTTGGTTGCCGTATAGTCTTGATCAATCGTCTTGATTACACGAAGCTTCTGTATCTTGTTATGCTGCCGTTTCCAAATATGTCTCAAGTTGTGCAGTTTCACTCCCTTAACATTGAGCTCCCTGACATTGTTCATTTCCTCAATCATCTGTGGGGAGAAAACCCACTGTGTGTACTGTAGGTCTAGCACCCACAAACCATGAAAACAGTTCCAAGACTGAACCTCCTCTCCAGCATCAATGTTCAGATCAAGGCAGTTATCAAGCCCAAGGAATCTCAATCCGCGGCAACAGAGGAAAGGAGGTGAAGCAAATCTAAAGGTACAGAGGCTAAGTTTTAGCACTCTAAGGTTCTCTGCATGTTGAAACATGTCATTATAATTTTGTAAAAGATGTGCAGGGTTGAGCTTTGACTTAAAAAAATATTCTACTAGTTCCACCGTGTCTTTTGATTCTGTGTCAATTTGGTGTTCTGCCAAGAAAAATGATGACACTGTTTGAGCCACTGCTGAGGCAGCCAGGAACCCATAATTACTTGAAATCAGGTGACTTGTTGAAATCCAGTTGTCAGTGTTCCGCATCATGTGGTAAAGTCCAGGGTCGTCCCATTCTTGCCACATCTCTTGTTGTAGAGCATCAGCAATCTCCCATTCCTGAATGATCCCATCACACACCCAATAGTTTGAAGCATGAACTGCCCAGTCATAGTCAATGATGTCTCTGCCAACAAAATTAAGTTTCGATATATACAACCAACATTTGGCAATTGTTGTAGGGTGCAGCTTGGCTACTCCGGAACATGTGTTGGAAGCAATTTCTGCCGCCTCCTCACACAATATATCCCACCAATGGCTTTGATCCTGGAACTCCATCCCATATATTTTGTTATGGAATTCGGCAGCAAGAAAAACATCTGCCTTTTGCACCTTGTCCTGAATTTTGGTACTCAGCCGAAACCTGCCCCTGAAGGTCCACAATATTTTGTTTCCCTTATACAGCTGATATAGAGGCAGACCAAAATTAGTTACATCTTTTATTTCATTATCACTCCCATTATGAAAAACCACAAGAAATCTTCCACTCATTAGGACATCATTAACAGCTATTCCAACATCATTGATCACGTCTCTGGAGCTTTCATCTTTTCCATTGATATCATCAGCCTCATCCTGCTCATCAATAAGATCTTTTGCTTGGGTCATCTCTAGTTTCTCTGCAATTTTCCTCTGCATTTCCCTTATGCTTTTCCACCTCGAGCAATCAATGTGGATTATCTTTTCAAACCTCAATTCTGGGTCCGTGATCTGGCCCAGTGTAAGCCGTTCGGCAACAGCTCTGAGGACAGCAGATACACCCAATCCTTCCCAACCATCAAAATAGACCACATTTGATACATCTGATTTCTTTAGTTTGTCAATTATACTATCAACAGCCTCAGCAACATTCTCTGCGGTAATTACCTGCAGTGGTTAACAGTAATTAACTGAGGTTAGCTCAGCTCAGCTGGGTTGCGTACAAAGTAACACGACTGTCTAGAAGAAGAAAAATCAAATGAACACTATATTCAGAGAAAAAAAAATGAAACTATATATTTAGAGGGGGGGAAATCCTTATTTGCTACTCCACTTTGAGCTGTCACCAAACTAGGTATGCCGATGTAGGCGAGGCTGGTGATGTGGAGACTTGTTGCCGCAGCCACCGTCCCCCACCTCGTCCATGGCTGGCGCCGCCTCCCCATCCTAAGCATCATCGCCCAGATCTAGTTTGGTGTCAAGCGCATGCGAATGGCTGCTACTTGGGGCCATCAGCAACTGGATGGCAACTGTGGCGGGCTGGCGGCAAGGTCAGGAAGCCGATGGAGGCGGGAGAGGAAGAGTTGATCAGCAAATGGGAGACGAGGATGGGCGGCCAACGGCCATACTGCCCATCAGCCATGGGGATGGGAGAAATAGCAAGAAAGAA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0250300.1 | 4 | 6888771 | C | A |
| Osa04LNT0250300.1 | 4 | 6889113 | C | T |
| Osa04LNT0250300.1 | 4 | 6889504 | T | C |
| Osa04LNT0250300.1 | 4 | 6889528 | C | G |
| Osa04LNT0250300.1 | 4 | 6889812 | T | C |
| Osa04LNT0250300.1 | 4 | 6889821 | A | C |
| Osa04LNT0250300.1 | 4 | 6890854 | C | G |
| Osa04LNT0250300.1 | 4 | 6890860 | T | G |
| Osa04LNT0250300.1 | 4 | 6892233 | G | A |
| Osa04LNT0250300.1 | 4 | 6892258 | A | G |
| Osa04LNT0250300.1 | 4 | 6892375 | T | G |
| Osa04LNT0250300.1 | 4 | 6892677 | T | C |
| Osa04LNT0250300.1 | 4 | 6892985 | T | C |
| Osa04LNT0250300.1 | 4 | 6891959 | T | C |
| Osa04LNT0250300.1 | 4 | 6893040 | G | A |
| Osa04LNT0250300.1 | 4 | 6893245 | A | G |
| Osa04LNT0250300.1 | 4 | 6893481 | A | C |
| Osa04LNT0250300.1 | 4 | 6893661 | C | T |
| Osa04LNT0250300.1 | 4 | 6893906 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0250300.1 | osa-miR437 | Cleavage | 5.0 | 20.828 | 1 | 21 |
| Osa04LNT0250300.1 | osa-miR530-3p | Translation | 4.5 | 24.716 | 1 | 21 |
| Osa04LNT0250300.1 | osa-miR530-3p | Cleavage | 4.5 | 9.046 | 1 | 21 |
| Osa04LNT0250300.1 | osa-miR395v | Cleavage | 5.0 | 14.059 | 1 | 21 |
| Osa04LNT0250300.1 | osa-miR1435 | Cleavage | 4.5 | 11.74 | 1 | 20 |
| Osa04LNT0250300.1 | osa-miR812g | Cleavage | 4.0 | 16.954 | 1 | 24 |
| Osa04LNT0250300.1 | osa-miR812h | Cleavage | 4.0 | 16.954 | 1 | 24 |
| Osa04LNT0250300.1 | osa-miR812i | Cleavage | 4.0 | 16.954 | 1 | 24 |
| Osa04LNT0250300.1 | osa-miR812j | Cleavage | 4.0 | 16.954 | 1 | 24 |
| Osa04LNT0250300.1 | osa-miR1319a | Cleavage | 5.0 | 13.688 | 1 | 24 |
| Osa04LNT0250300.1 | osa-miR2093-5p | Cleavage | 5.0 | 18.988 | 1 | 20 |
| Osa04LNT0250300.1 | osa-miR2866 | Translation | 3.5 | 10.718 | 1 | 20 |
| Osa04LNT0250300.1 | osa-miR2926 | Cleavage | 4.5 | 16.668 | 1 | 20 |
| Osa04LNT0250300.1 | osa-miR5160 | Cleavage | 4.0 | 13.958 | 1 | 22 |
| Osa04LNT0250300.1 | osa-miR5160 | Cleavage | 5.0 | 23.45 | 1 | 22 |
| Osa04LNT0250300.1 | osa-miR1852 | Cleavage | 5.0 | 18.688 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0250300.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Osa04LNT0250300.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0250300.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0250300.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0250300.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0250300.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)