© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0250500.1
TGTAAAGAAGTTACTTGACACTCGACTGGAGAATGACACACACGAAATGGACAGTCATGGATACCAAAAAATGATGCATGTCAAAATTGAATATGCCAACCTTACCATGACTAACAAAACTTACACAAAGAAAACCAAGGTGGGTTCACCCTAATGTCCTCCCTTTTGCAAAGCACCTCAGACTAATACACCTTTGAGATTACATACTATATAAATATATATATAACTTTACATGAAACTTGCAGAAAACATTTCTTCTAGTAGAAACAATGATGCTAGAAAAGCATGCATTCACTTGTAGTTTTGGATTATCTTAGATAAAGATGAGTATGTGCCCACACCAGCACAGCAGAGCCCAACAACAATGATGAATACACATAGCAGTACCTGATACCAAGTCACTGTTCTCCTAAGGATTGCCAAGAAGCATGCACATGGTAGAATATACGCCACAAACATGGTGAGGAAGGACCCAACTAGTGACATAACAAGTCCGAAGAATGGAACAGAGAGAGCCACAATGAGGGAAGATAGCACAAGTGCTGATCTAAGCATGACTATGTTTGAGTATGTCTGTCGATTAGGAGGTAGCAACTCCTCCATACTAAGGGCAAGAGGAGTCATGGTCAGTGCATATTTAGTTATTGGATTTGTCACCGTTGTCCAGACGGCAATCTTGGAAGCTACCAGATTAGATGGCAAGTTCAATGTGAACTGAGATTCTGTTGATTCACCAAACATTATGTATCCCATAATTGCAGCACCAGCAAACAAAACAGTAGATAATGCAATGCAGGTGAAAATAACAGCAGGGAACTGGCTGCGTTTCTTCATGGAAGAGTAGATGTTAGGGAACACTCCATGACCTGAGTAGCAGTAGCCATACAACCCAACGGCAATGGGAATTCCTGGGAGATTCAGTGCTGTCCCTTCATCCTTGGCCTCAATGTGATCAACAAGTCCAACCCAGAACAGGCAAGCAACAATGACTATAGATGCAATCACTCCTCCAGCTGAAATGAAGCTTAGACAGCTGAGATCGCGAAGCCAAGTTGTTGGCATGACAATCAGAGTAGTCAGGATTGCGAATAATATATGCGCATTTATTGTAAATGTCCCAATGGTCAGGTGTGCATTGGGGAACAACTTTGACAAATTATCACTCTCTAATATCAGATACTCAATGCAACAGGCAAACAGTTCCATGTATAGAATTACCGAGATGACGATGCGACCGGTGGTGCCGAAAGCTGCGTGGCCAATGTCCGGGTAGGTCTCAAGGCCTTCCTTGCTGTCCAGGCAGCGTTTCAGCAGGATGCCGGTGTACCATGCCAACACAGCCAACAGAGCCAATATAATCAGCCCAAGCCAGCCACCTTGCTTGACAGCATAAGGCGTTGATAGGACCCCCACACCACACAGGACATTCACTCCGTTCAAGACGCCCTGAGTGTAGGTGCACTGCCGGTAGGGCCCAACCTCGTGGTGTCCAACCACCAGCGGCTTCTGATCCTCGGGGATCTTCTGCAGAGACGACGGCCTCCTCGGCGGCAGGAGGTACTGCGAGCTCTTCCGGCCATCTTCGTGCTGCTGTTGCCGGCGGTCACCTTCGTCGTCGGCCGCCGCCGTCGTCGGCAGCAGTGGCTTGATGAGCCCGGAGATGATCTCCGGCGGCTTTCCCCGGAACGAGGCGGTCAGGAATGAGTTTGATAGACGGCTCAGCGTCGGAGTGCCCAGGAAGCTCAGGTTCGGGGATTGCACGCTACTGTACATGTCAATCGACTGCCTGTAGCTCTGAGGCCACTGCTGCGTATAGGAGCTGGGCTGGCTGCCGCGGCCGCCACCGCCACCGCCGGCGGCGGCGACCCGCGGGGTACCGCACGAAGACGACGAGTCCGACCCGTCGTCCGACTCATCGCCGCCGTGGCCGCGACGCTTCCCATCCTCGACGGCGGCGGCGGCGTCGTCCTCCTCGTCGCTGTCGATGAGGAAGCTCCGGTCCGACACCGAATTGTCCATCTCTCGCAGTAGACCTCGTGCTGAATGCAAATGCAAATGCAGCAACGATGGATCGGGGGGAGAGAGAGGGAGAGAGAGACACTCTGTGTGTGTGTGTGTGTGTGATGAGGACGGGTTTATATTGCGGCGGTGTGGGCGCTAGCCGCTTAGCAAGCGGCCGGGATGCATTCAGTGGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0250500.1 | 4 | 6927016 | A | G |
| Osa04LNT0250500.1 | 4 | 6913134 | A | G |
| Osa04LNT0250500.1 | 4 | 6913484 | A | G |
| Osa04LNT0250500.1 | 4 | 6914108 | G | A |
| Osa04LNT0250500.1 | 4 | 6914290 | G | A |
| Osa04LNT0250500.1 | 4 | 6914585 | G | A |
| Osa04LNT0250500.1 | 4 | 6914620 | G | A |
| Osa04LNT0250500.1 | 4 | 6914734 | A | G |
| Osa04LNT0250500.1 | 4 | 6915018 | A | G |
| Osa04LNT0250500.1 | 4 | 6915523 | A | G |
| Osa04LNT0250500.1 | 4 | 6915721 | T | C |
| Osa04LNT0250500.1 | 4 | 6915758 | T | C |
| Osa04LNT0250500.1 | 4 | 6915909 | A | T |
| Osa04LNT0250500.1 | 4 | 6916053 | A | G |
| Osa04LNT0250500.1 | 4 | 6916685 | T | G |
| Osa04LNT0250500.1 | 4 | 6916699 | T | C |
| Osa04LNT0250500.1 | 4 | 6916843 | T | C |
| Osa04LNT0250500.1 | 4 | 6916890 | G | T |
| Osa04LNT0250500.1 | 4 | 6917167 | T | C |
| Osa04LNT0250500.1 | 4 | 6917532 | T | G |
| Osa04LNT0250500.1 | 4 | 6917646 | T | A |
| Osa04LNT0250500.1 | 4 | 6917872 | T | G |
| Osa04LNT0250500.1 | 4 | 6924184 | C | A |
| Osa04LNT0250500.1 | 4 | 6924194 | T | G |
| Osa04LNT0250500.1 | 4 | 6924439 | T | C |
| Osa04LNT0250500.1 | 4 | 6924451 | C | T |
| Osa04LNT0250500.1 | 4 | 6924478 | G | A |
| Osa04LNT0250500.1 | 4 | 6924479 | T | C |
| Osa04LNT0250500.1 | 4 | 6924716 | C | G |
| Osa04LNT0250500.1 | 4 | 6924967 | A | C |
| Osa04LNT0250500.1 | 4 | 6926198 | G | T |
| Osa04LNT0250500.1 | 4 | 6926222 | T | G |
| Osa04LNT0250500.1 | 4 | 6926249 | A | G |
| Osa04LNT0250500.1 | 4 | 6926268 | A | G |
| Osa04LNT0250500.1 | 4 | 6926301 | T | C |
| Osa04LNT0250500.1 | 4 | 6926317 | A | G |
| Osa04LNT0250500.1 | 4 | 6926440 | G | A |
| Osa04LNT0250500.1 | 4 | 6926517 | C | A |
| Osa04LNT0250500.1 | 4 | 6926794 | C | G |
| Osa04LNT0250500.1 | 4 | 6927037 | G | C |
| Osa04LNT0250500.1 | 4 | 6927128 | T | A |
| Osa04LNT0250500.1 | 4 | 6914194 | A | G |
| Osa04LNT0250500.1 | 4 | 6925687 | A | T |
| Osa04LNT0250500.1 | 4 | 6926542 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0250500.1 | osa-miR171f-5p | Cleavage | 5.0 | 16.986 | 1 | 21 |
| Osa04LNT0250500.1 | osa-miR1439 | Cleavage | 4.5 | 16.946 | 1 | 21 |
| Osa04LNT0250500.1 | osa-miR396g | Translation | 5.0 | 21.157 | 1 | 21 |
| Osa04LNT0250500.1 | osa-miR396h | Translation | 5.0 | 21.157 | 1 | 21 |
| Osa04LNT0250500.1 | osa-miR396d | Translation | 5.0 | 21.157 | 1 | 21 |
| Osa04LNT0250500.1 | osa-miR5518 | Cleavage | 4.5 | 24.18 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0250500.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0250500.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0250500.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0250500.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0250500.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Osa04LNT0250500.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)