© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0250700.1
GGAGTACCAAAATTCCCCAGTAGCAGCCGCCGCCGCCGCCGCCGCCGATTCACCAACCCTTCTCCTCCATCGGCATGTCGCGGGGGGGAGGCCGGCTGCCCCCGCGCTTCTCTCTACCCAGCTGTACCTGTACCTGAATGCTTCTATCATGCGAGTGAACTGATATAGGACGAAGGGTCAGGAGGCGTTGGGATTTGTACTGCTCCATCAAGCATCTGCATCACCTTATGCATTGTTGGCCGCATCGATGGCTCCTCCTGGAGGCACCACAGTGCCACAGCAACGAAGCGCTCCACCTTTTTTATGTTGAAGATTGCCTCGTCATCGCTCGCCACCAGCAAGTCAATCCTCCCACACCTCACACAAGCTCAAGCAGGATCACTCCAAAGCTATAAACGTCGACCTTAGAAGTAATCCCTATGTTCTTGAACCACTCAGGTGCAACATATCCTCGAGTACCCCGAATGCCGGTGTTTGTTTGTGTCTGATTCACCGGAAGAAGCTTTGCTAGACCAAAATCTGAAATCTTTGCTACAAAATTATCATCGAGAAGGATATTCTGTGGTTTCATATCGCAGTGGATGATTTGTTTATTACACTCCTCATGTAGGTAGAACAGTCCTCGTGAAACCCCAAGTGCTACTTGAACACGGAGGCTCCAATGCGGATGACTATCGTTGAAGAGGAATGTATTGAGTGAGCCATTGCTCATGAACTCATACACTAGCAGCTTTTCAGTTCCCTCATTGCAAAAACCAAGCAGTCTAACTAAGTTCCTGTGAAACGTCTGCCCAATGGTTTGGACTTCCACCAAGAACTCCTTTTGTGCTTCCTGCTGAAGCTTTTCGATTTTCTTGACTGCGATGTTAGTTCCACACTCATCTTGCAGCTGTCCTTTGTAGACAATACCTGAGGCTCCTGTACCAAGTACCTCATGGAAACCACCGGTTGCCTTTTCCAGCTCTCTGTAAGTGAAAATCTTTGAAGGTAATCCAGAATTACTGGGTAGTTGCGATAACTGGGTTTTCTTCCTCGAGGTGATACTACAATAAGTACCAAAAAGCAGAACAAAGATTAGGAGAAAGTTCACCAATACAGAGCTTCCAAAAAACAATGAGCTCCCAAGAATCCAATACTTTTTGTCCTTCTTCCATTTGCTGGAGCCGCTGCTGATCATGGATGGTGAATTGGTGCTCCTAGGCACCTTAAGAAGAACTGTCGCCTGTAAACTGGAATCCATATTCCCATTTGATAAAGGGAGCTTCTTTTTATAACAAGTGTTTGAGGGTTTATTGAACACGGCAACGGAGCAGAAGCAATCAATGACGCACAGCCTTCGGCATTCGGTCTCATCTATCGGGCTGTACTGCTCATAGTCAGATAGAGGCCAATTAATGCGATCAATTGGTGTCATCTCATACTGCACCATTGCTGCTGTCTCATCTAGATCACAGCTTTGTGGCTCAAAATCTGGCCTGCAACCTTTGTATGTCCTCTCATTGTCGAAGAACTTGTACCTCTGTGGGCATAGACAATTTGTTGTGTTCTTGGTGCCATCAAAGGTACAGTAACTGTTGAAGCCGCATGCACCACTGCCTACCTTTGTTTGAATTGTCTGGCAGATGTTCTCCGGAAGTGCATCCACCGCTCTCCATTGCTCTTGCCATAAGCTCCTGGCCTGTTTGCTCTTTGGGTAAATATATTGCCGGAACACACCATCTGTATCAAGGGTTGCACGGTGGAAGAAATCACCCATAGAGTCCACTCCTGCAGAAGTGATGTTTATCTGTGAACCATTAGTCAGCGTGAAGTATATCCTTCCAGTTTCATTGAACACCAGCTGTGAGCCATTCCCCACTGTGTTACTGGCCCAGTATGGATCATGGTAGTATGCAGAAGGTACAGCAACTAGATACAGCACAAGATTACCGTCATCTTGAACATTTAGTTGAAACCGGCCATTGGAATAGTCTGTGGCGAGGAGACGGCTGTGGAGTGCTGTCCCTAGTGGGAGCACTTGTGTGGGTAGGATGGTATCAGAAGGGTCACCAAAGGACTCCCACTTTGTTGCGCCATCAGTGCCTAAAAGCCTGAAATTACCGGTGTCGAGCATTCTAGCATAGCCCACATCAGTGACTCGTGGATTCCATACCTCGTTGCCAGATGGATCGCGAAGAGAGAGTGCTCCATCAGCGAGCTTGAGGATAGAGCCAGCTTGGACTTGTATCGGTATTGTATCATCTTGCCTATTGGAGCTAGTCTTGGCATACCAGATGACGGTCTTGTCAGCGATCTTGTTGAACCAGACAGCGAGCAGGTATGAGGAGGAGTTTCCATCTACCGCCAGAAAACCGAATGCAAAATCAGCAGTGGGCGAGATCCATGAGTTGTTTATCCCCTGGGGTGTCAAAGAGGAGCCTATGCTGATGTTTAGCTGAGCTTGGGCAGATTTGGTGCAGTATAGTAGCAAGAGTTGCAGGATGGGCAAGAACAGGAGAGGTGCCATTGCTATTGATCAACCTTTTGCTCGTACTAGATGACAACAAAACTTATAGCCCTTGGAGAGCGGCATTTGTTAGTCTTGATCACTTCCATACTTGACTAACCAAAAGTTTCTCTGCGAGGCAACCGGTTGAACCTGTCAAATGCAATTACAAAGCTGTCAATATGATAGACATAAGAGGGAGATTGGTTCACATTTCCTTATCAAAACTATAGAAAATGTCGGCTTTGAATGCATTGACCACCTGTATGGAGAGAGAAAGAAAGACGTGTTCAGAAGTCTTTAGAGAAAGAAATACGTGTTCAGAAGTCTTTCTATGTGTTTCTTTCCTCCTGAGGTTGGTCTTTCCAACCGCGTTTCAGAAGAACAGTTTTGGCCAGCTTGTATGGTTATGGTCAAGCCAGGTGTAATCTTTTCATGGTAATATAGGAGTACACTGTAACATTAATTG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0250700.1 | 4 | 6954826 | C | A |
| Osa04LNT0250700.1 | 4 | 6955093 | A | G |
| Osa04LNT0250700.1 | 4 | 6955881 | T | G |
| Osa04LNT0250700.1 | 4 | 6956181 | A | G |
| Osa04LNT0250700.1 | 4 | 6956655 | T | C |
| Osa04LNT0250700.1 | 4 | 6956863 | A | T |
| Osa04LNT0250700.1 | 4 | 6957050 | A | G |
| Osa04LNT0250700.1 | 4 | 6957376 | A | G |
| Osa04LNT0250700.1 | 4 | 6957474 | G | A |
| Osa04LNT0250700.1 | 4 | 6957685 | G | A |
| Osa04LNT0250700.1 | 4 | 6955673 | T | G |
| Osa04LNT0250700.1 | 4 | 6954629 | A | G |
| Osa04LNT0250700.1 | 4 | 6955463 | T | G |
| Osa04LNT0250700.1 | 4 | 6957633 | A | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0250700.1 | osa-miR5812 | Cleavage | 5.0 | 7.334 | 1 | 24 |
| Osa04LNT0250700.1 | osa-miR5822 | Translation | 3.0 | 21.851 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR396a-3p | Cleavage | 4.5 | 14.457 | 1 | 20 |
| Osa04LNT0250700.1 | osa-miR396b-3p | Cleavage | 4.5 | 14.457 | 1 | 20 |
| Osa04LNT0250700.1 | osa-miR159c | Translation | 3.0 | 10.75 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR159d | Translation | 3.0 | 10.75 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR159e | Translation | 3.0 | 10.75 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR166k-5p | Cleavage | 4.0 | 22.832 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR166l-5p | Cleavage | 3.5 | 22.832 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR171b | Translation | 5.0 | 22.042 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR171c-3p | Translation | 5.0 | 22.042 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR171d-3p | Translation | 5.0 | 22.042 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR171e-3p | Translation | 5.0 | 22.042 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR171f-3p | Translation | 5.0 | 22.042 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR1852 | Translation | 4.5 | 13.153 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR1861n | Cleavage | 4.5 | 16.311 | 1 | 22 |
| Osa04LNT0250700.1 | osa-miR827 | Translation | 4.5 | 21.256 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR2099-5p | Translation | 5.0 | 17.383 | 1 | 22 |
| Osa04LNT0250700.1 | osa-miR2876-5p | Cleavage | 4.5 | 20.355 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR5073 | Cleavage | 4.5 | 16.277 | 1 | 23 |
| Osa04LNT0250700.1 | osa-miR5488 | Cleavage | 4.5 | 17.155 | 1 | 21 |
| Osa04LNT0250700.1 | osa-miR5515 | Translation | 5.0 | 18.975 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0250700.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Osa04LNT0250700.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0250700.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0250700.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0250700.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0250700.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)