© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0250800.1
ACCAGGTCCACCATATAATAGACGGGCTCCATCATCGTTGAACCTGATATCTCCAGCATCATAGCAGAATGGTCTAGTACTGCCTGAAAATGTGTTGTGTGTGCCTGGAATGAAGTACTGGCTGTCTTTGTTGATGACTTTGATACTCCTCACATAGGCAGCTTTCCCAGGTCCAGTGGCTGCCCAATGTCCACTGCCCAGTTCTGGAAGGTGTAATTGAACTGTTGGTCCATGGACTTGCCCACCCCAAAAACAAGCACTTGCTTTTTCATTCATGTAGGTGAAAATTGAAGGAGGCCAATATCCAAGTGGTTTTTTATCACGCCCATATGCTAGCCACCAATTTCCGGTCTTCGGGTCCTTTGATATAGTAACAGTAATTTCATACTGATCTCCATTATAGGTAGAAACTGGTTCAATTCTCCCACCAATACCAACACTCGTACTGACTTGTACAAAGCCAGGACACATATGATCAAAGCATGGCATGTTCACCGTATTAACTTGCCAGTATATATGAAATCTGGCAAAGTTGTCACCATGGTAGTTTGGCCATACAATAGAACCAGCACCGATTCCCTCATAATTTCCAGTAGGTCCGTTTACCATTAATGCCCATGATGCACTAAGATCATTTTGTCCTCGCACTTTTGGCTCATAGACATTGATTGCAACTTGTGTTCCATATATTTCATCATATGTTGTACACCCAGCTCTCCCCTCCACGATGATGGGTATTACCGATTGGATCAAAACTAAATTGTGTCTTCAGATCAGCTTTACTATTTTGTAACAATGGTATTGTTCCCTTTGGGCATGCAATGGTAGGCAGATGAGCTTCTGTCGCTATAGTGTCTGATGATGATTTGATTTTCAGCTCTGATGGATAAGAGGTGGGCTCCATCTGTATTATGTGCCCTTTCAACAATGGATGAGATAGTGCTGGTTGTAGATTGATATCGATGCAATGAAACACGTCGCCGTCTCCAGTCTCAATGATCTTGTTGATAATCTTGTCGGAAATAGGTTGATCATAACTTGCTTCATGCTTTACATATCTACCTTCTTGTATTCCTGCCGCAAGGAGGACAAGATATGATATGAAAATTATCACTGGAAGTTCTAGTGGTTTGGTCATTGAGAAAAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0250800.1 | 4 | 6997067 | G | T |
| Osa04LNT0250800.1 | 4 | 6997075 | A | G |
| Osa04LNT0250800.1 | 4 | 6997174 | C | T |
| Osa04LNT0250800.1 | 4 | 6997332 | T | G |
| Osa04LNT0250800.1 | 4 | 6997520 | A | G |
| Osa04LNT0250800.1 | 4 | 6997638 | C | T |
| Osa04LNT0250800.1 | 4 | 6997718 | A | C |
| Osa04LNT0250800.1 | 4 | 6997918 | A | T |
| Osa04LNT0250800.1 | 4 | 6998401 | C | T |
| Osa04LNT0250800.1 | 4 | 6998457 | C | T |
| Osa04LNT0250800.1 | 4 | 6998839 | A | G |
| Osa04LNT0250800.1 | 4 | 6998969 | C | T |
| Osa04LNT0250800.1 | 4 | 7001197 | C | T |
| Osa04LNT0250800.1 | 4 | 7001209 | A | G |
| Osa04LNT0250800.1 | 4 | 7001317 | A | C |
| Osa04LNT0250800.1 | 4 | 7001321 | C | A |
| Osa04LNT0250800.1 | 4 | 7001964 | T | G |
| Osa04LNT0250800.1 | 4 | 7001966 | C | T |
| Osa04LNT0250800.1 | 4 | 7002088 | G | T |
| Osa04LNT0250800.1 | 4 | 7003441 | A | T |
| Osa04LNT0250800.1 | 4 | 7003694 | G | T |
| Osa04LNT0250800.1 | 4 | 7003744 | T | A |
| Osa04LNT0250800.1 | 4 | 7003787 | C | T |
| Osa04LNT0250800.1 | 4 | 7004842 | A | C |
| Osa04LNT0250800.1 | 4 | 7004949 | A | G |
| Osa04LNT0250800.1 | 4 | 7004989 | G | T |
| Osa04LNT0250800.1 | 4 | 7005166 | G | A |
| Osa04LNT0250800.1 | 4 | 7001955 | C | G |
| Osa04LNT0250800.1 | 4 | 7001313 | C | T |
| Osa04LNT0250800.1 | 4 | 7001944 | T | C |
| Osa04LNT0250800.1 | 4 | 7004173 | A | G |
| Osa04LNT0250800.1 | 4 | 7004207 | A | G |
| Osa04LNT0250800.1 | 4 | 6997070 | G | T |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa04LNT0250800.1 | DTM_#DNAt_MULE_japo_Os0124 | Chr4 | - | 7004035 | 7004235 | 200 |
| Osa04LNT0250800.1 | DTM_#DNAt_MULE_japo_Os2537 | Chr4 | - | 6999204 | 7000620 | 1416 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0250800.1 | osa-miR5532 | Cleavage | 5.0 | 13.582 | 1 | 22 |
| Osa04LNT0250800.1 | osa-miR5835 | Translation | 5.0 | 20.136 | 1 | 24 |
| Osa04LNT0250800.1 | osa-miR156b-3p | Translation | 4.5 | 16.739 | 1 | 21 |
| Osa04LNT0250800.1 | osa-miR171i-5p | Translation | 4.5 | 18.249 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0250800.1 | 4 | An8-glum | Morphological trait | Panicle/flower | nan | nan |
| Osa04LNT0250800.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0250800.1 | 4 | nan | Morphological trait | Root | RM261 | RZ69 |
| Osa04LNT0250800.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0250800.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Osa04LNT0250800.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)