>Osa04LNT0251000.1

TCAACCAAAAAAATTCATAGGTGAGTAAAGGATCAACATCACCGAAAATTCAGGAAATAAATTGAAAAGAATTTATCATTGTTCCCCCAATCAGCCAGCAAGTAGCGAGTGTTAGGAAACCGCCGGCCCATGAAAGTCCGGCCCGGTTACCCACTAATTGGGTCCATCACTAAATATGGAAAGTACTCATGGCTATGCCTATATATAGAGGGGAGGAGGTACTATTGTATTACATAAGTGAATGAATGAAGGAAAAGAGTCCTACCCTTACATCACTGTGTCTCCAATTCTTGTAGATATTACGGGACCCTCCAGCAAGTAGCAAGTGTTAGGAAACCGCCGACCCATGAAGGTCTGGCCCGGTTACCCACTAATTGGACCCATCACTAAATATGGAAAGTACTCATGGCTATGCCTATATATAGAGGGGAGGAGGTGCTATTGTGTTACATAAGTGAATGAATGAAGGAAAAGAGTCCTACCCTTACATCTCTGTGTCCCCAATTCTTGTAGACATTACGGGACCCCTTAGACTGCTTCGTGTAGCAGGAGGGTTGCGTAATACGTTATCAGCACGACGTTCTACCGGAGACCGAGAAAGAAGAAGGGCAAGAAACTCTTGAATCCTTTTACATCTTGTAGATTGAATTGCAAAAACGAATTCCTTGCATTCTTCTCGTTCCGTTTTTGCGGTTTTCGATGGATTCCGTCACCGCCGACTTGGAGTCGCCGGCGGACGCCGACAGACGGATTTCCACCACCGGTAGCCGGCTGCAGCATGCACGGCACAGG

Explanation	CPC Score
noncoding	-1.34906

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0251000.1	osa-miR5827	Cleavage	5.0	13.925	1	21
Osa04LNT0251000.1	osa-miR417	Translation	3.5	15.761	1	21
Osa04LNT0251000.1	osa-miR2118l	Cleavage	4.5	17.124	1	22
Osa04LNT0251000.1	osa-miR2118l	Cleavage	5.0	18.46	1	22
Osa04LNT0251000.1	osa-miR5504	Cleavage	5.0	15.908	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0251000.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456
Osa04LNT0251000.1	4	An8-glum	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0251000.1	4	nan	Morphological trait	Root	RM261	RZ69
Osa04LNT0251000.1	4	nan	Morphological trait	Root	RM261	RZ69
Osa04LNT0251000.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0251000.1	4	qSNP-4a	Morphological trait	Panicle/flower	RM401	RM335

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus